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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
  • cytoskeleton 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g087750.2.1 Tomato mitochondrion, nucleus 76.0 100.0
PGSC0003DMT400083067 Potato mitochondrion, nucleus 75.0 98.68
PGSC0003DMT400046771 Potato mitochondrion, nucleus 75.0 98.68
AT2G02760.2 Thale cress mitochondrion, nucleus 73.5 96.71
Bra024808.1-P Field mustard mitochondrion, nucleus 73.5 96.71
Bra026222.1-P Field mustard mitochondrion, nucleus 73.5 96.71
Bra026582.1-P Field mustard mitochondrion, nucleus 73.5 96.71
Bra017410.1-P Field mustard mitochondrion, nucleus 73.0 96.05
PGSC0003DMT400046571 Potato mitochondrion, nucleus 73.0 96.05
TraesCS3B01G131500.2 Wheat nucleus 72.5 95.39
Bra026833.1-P Field mustard mitochondrion, nucleus 72.5 95.39
CDY39315 Canola mitochondrion 72.5 95.39
AT1G14400.1 Thale cress mitochondrion, nucleus 72.5 95.39
PGSC0003DMT400017857 Potato mitochondrion, nucleus 70.5 92.76
TraesCS3D01G114600.3 Wheat mitochondrion 72.5 89.51
TraesCS3A01G112600.1 Wheat mitochondrion 72.5 89.51
Bra016704.1-P Field mustard nucleus 65.0 85.53
KRG99148 Soybean mitochondrion 54.5 83.21
CDX84034 Canola nucleus 44.0 82.24
Bra016703.1-P Field mustard nucleus 77.0 73.33
CDX96859 Canola mitochondrion 66.0 69.84
HORVU3Hr1G020470.1 Barley plastid 74.0 65.2
PGSC0003DMT400084207 Potato cytosol 33.0 44.59
PGSC0003DMT400057302 Potato cytosol 33.0 44.59
PGSC0003DMT400009229 Potato nucleus 32.5 43.92
PGSC0003DMT400049914 Potato cytosol 32.5 43.92
PGSC0003DMT400032059 Potato cytosol 32.5 43.92
PGSC0003DMT400023419 Potato cytosol 32.5 43.92
PGSC0003DMT400014816 Potato cytosol 32.5 43.92
PGSC0003DMT400078296 Potato cytosol 32.0 43.24
PGSC0003DMT400000272 Potato cytosol 32.0 43.24
PGSC0003DMT400058107 Potato cytosol, mitochondrion 29.5 39.86
PGSC0003DMT400012799 Potato mitochondrion 32.0 38.1
PGSC0003DMT400032251 Potato cytosol 28.5 37.25
PGSC0003DMT400054795 Potato cytosol 28.0 36.6
PGSC0003DMT400053006 Potato golgi, nucleus, vacuole 32.0 36.57
Protein Annotations
MapMan:19.2.2.1.4Gene3D:3.10.110.10GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005524GO:GO:0016740InterPro:IPR000608InterPro:IPR016135UniProt:M0ZLF5PFAM:PF00179
EnsemblPlantsGene:PGSC0003DMG400001314PGSC:PGSC0003DMG400001314EnsemblPlants:PGSC0003DMT400003320ScanProsite:PS00183PFscan:PS50127PANTHER:PTHR43898
PANTHER:PTHR43898:SF8SMART:SM00212SUPFAM:SSF54495InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI0002955921:::::
Description
Ubiquitin carrier protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001314]
Coordinates
chr2:-:46391799..46396166
Molecular Weight (calculated)
22816.1 Da
IEP (calculated)
6.264
GRAVY (calculated)
-0.449
Length
200 amino acids
Sequence
(BLAST)
001: MIGIPDVSEQ LTYHAKVYIY HKQANKNLNS EPITFIEILA AFNTQAVRMS TPARKRLMRD FKRLQQDPPA GISGAPYDNN IMLWNAVIFG PDDTPWDGGT
101: FKLTLQFSED YPNKPPTVRF VSRMFHPNIY ADGSICLDIL QNQWSPIYDV AAILTSIQSL LCDPNPNSPA NSEAARMFSE NKREYNRKVR EIVEQSWTAD
Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
Arabidopsis Description
UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.