Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
- nucleus 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016704.1-P | Field mustard | nucleus | 77.25 | 96.05 |
| CDX84034 | Canola | nucleus | 49.21 | 86.92 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 69.84 | 86.84 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 68.78 | 85.53 |
| CDY39315 | Canola | mitochondrion | 68.25 | 84.87 |
| Solyc02g087750.2.1 | Tomato | mitochondrion, nucleus | 67.72 | 84.21 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 66.67 | 82.89 |
| CDY38761 | Canola | mitochondrion | 66.67 | 82.89 |
| CDY11654 | Canola | mitochondrion | 66.67 | 82.89 |
| CDY03040 | Canola | mitochondrion, nucleus | 61.38 | 82.27 |
| Solyc02g067420.2.1 | Tomato | nucleus | 64.55 | 80.26 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 68.25 | 79.63 |
| TraesCS3A01G112600.1 | Wheat | mitochondrion | 68.25 | 79.63 |
| CDY66232 | Canola | mitochondrion, nucleus | 62.43 | 78.67 |
| CDY30726 | Canola | mitochondrion, nucleus | 62.43 | 78.67 |
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 62.96 | 78.29 |
| KRG99148 | Soybean | mitochondrion | 50.26 | 72.52 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 69.84 | 66.0 |
| CDY68969 | Canola | mitochondrion | 49.21 | 64.14 |
| HORVU3Hr1G020470.1 | Barley | plastid | 69.31 | 57.71 |
| CDY14388 | Canola | cytosol | 32.28 | 41.22 |
| CDY49174 | Canola | cytosol | 32.28 | 41.22 |
| CDY47067 | Canola | cytosol | 32.28 | 41.22 |
| CDY35636 | Canola | cytosol | 32.28 | 41.22 |
| CDX96210 | Canola | cytosol | 32.28 | 41.22 |
| CDY25571 | Canola | cytosol | 31.22 | 39.86 |
| CDY34409 | Canola | cytosol | 31.22 | 39.86 |
| CDX89747 | Canola | cytosol | 30.16 | 38.51 |
| CDX76970 | Canola | cytosol | 29.63 | 37.84 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 29.63 | 37.84 |
| CDY51965 | Canola | cytosol | 29.63 | 37.84 |
| CDY31408 | Canola | cytosol | 29.63 | 37.84 |
| CDY17396 | Canola | cytosol | 29.63 | 37.84 |
| CDY02238 | Canola | cytosol | 29.1 | 37.16 |
| CDY23674 | Canola | cytosol | 21.69 | 36.94 |
| CDX73346 | Canola | cytosol | 21.69 | 36.94 |
| CDY37098 | Canola | cytosol | 21.69 | 36.94 |
| CDY06521 | Canola | cytosol, plastid | 31.22 | 36.88 |
| CDY68877 | Canola | cytosol, mitochondrion | 31.22 | 36.88 |
| CDY35126 | Canola | cytosol | 29.63 | 36.6 |
| CDX83936 | Canola | cytosol | 29.63 | 36.6 |
| CDX81788 | Canola | cytosol | 29.63 | 36.6 |
| CDY54372 | Canola | cytosol | 29.63 | 36.6 |
| CDX96802 | Canola | cytosol | 29.1 | 35.95 |
| CDX88485 | Canola | cytosol | 29.1 | 35.95 |
| CDX87428 | Canola | cytosol | 29.1 | 35.95 |
| CDY40025 | Canola | cytosol | 29.1 | 35.95 |
| CDY08368 | Canola | cytosol | 30.16 | 35.85 |
| CDY14587 | Canola | cytosol | 29.1 | 35.71 |
| CDY26882 | Canola | cytosol | 26.98 | 35.17 |
| CDY57941 | Canola | cytosol | 28.04 | 34.19 |
| CDY11958 | Canola | cytosol | 31.22 | 34.1 |
| CDX79272 | Canola | cytosol | 30.16 | 33.53 |
| CDY54342 | Canola | cytosol | 32.28 | 33.15 |
| CDY38184 | Canola | cytosol | 30.69 | 32.22 |
| CDY39254 | Canola | cytosol | 17.46 | 28.45 |
| CDY06520 | Canola | cytosol | 23.28 | 28.39 |
| CDY65274 | Canola | cytosol | 21.69 | 28.08 |
| CDY36778 | Canola | cytosol | 30.16 | 26.27 |
| CDY59253 | Canola | mitochondrion | 24.34 | 25.14 |
| CDY23617 | Canola | plastid | 23.28 | 24.04 |
| CDX73344 | Canola | cytosol | 16.4 | 18.9 |
Protein Annotations
| EnsemblPlants:CDX96859 | EnsemblPlantsGene:GSBRNA2T00103100001 | Gene3D:3.10.110.10 | GO:A0A078E828 | InterPro:IPR000608 | InterPro:IPR016135 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | MetaCyc:PWY-7511 | PANTHER:PTHR43898 | PANTHER:PTHR43898:SF5 |
| PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDX96859 | ProteinID:CDX96859.1 | ScanProsite:PS00183 | SMART:SM00212 |
| SUPFAM:SSF54495 | UniParc:UPI0004EE60F8 | UniPathway:UPA00143 | MapMan:19.2.2.1.4 | : | : |
Description
BnaA08g24020D
Coordinates
chrLK031895:+:1269522..1270914
Molecular Weight (calculated)
22238.5 Da
IEP (calculated)
7.127
GRAVY (calculated)
-0.481
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MYYVIKYRLY TCSSSIRIYL DFVKFSEVLS ERLERRMSTP ARKRLMRDFK MLEQDPPAGI NGSPQDNNIM LWNAFIFGPD DSPWDGGTFK LSLQFSEDYP
101: NKPPRVRFVS RMFHPNIYLD GRICLDILQN QWTPVYDCAA ILISIQSLLC DPNTNSYVNS EAALMYSENK REYNRRVRDA VEQSWTNDL
101: NKPPRVRFVS RMFHPNIYLD GRICLDILQN QWTPVYDCAA ILISIQSLLC DPNTNSYVNS EAALMYSENK REYNRRVRDA VEQSWTNDL
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
Arabidopsis Description
UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.