CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23674	Canola	cytosol	45.73	67.57
CDY65274	Canola	cytosol	59.76	67.12
CDY37098	Canola	cytosol	45.12	66.67
CDX73346	Canola	cytosol	44.51	65.77
AT1G36340.2	Thale cress	cytosol	43.9	46.75
CDY14388	Canola	cytosol	33.54	37.16
CDY02238	Canola	cytosol	33.54	37.16
CDX96210	Canola	cytosol	33.54	37.16
CDY35636	Canola	cytosol	33.54	37.16
CDY47067	Canola	cytosol	33.54	37.16
CDY49174	Canola	cytosol	33.54	37.16
CDX89747	Canola	cytosol	32.93	36.49
CDY34409	Canola	cytosol	32.93	36.49
CDY51965	Canola	cytosol	32.93	36.49
CDY25571	Canola	cytosol	32.93	36.49
CDX76970	Canola	cytosol	32.93	36.49
CDY17396	Canola	cytosol	32.93	36.49
CDY31408	Canola	cytosol	32.32	35.81
CDX71304	Canola	cytosol, mitochondrion, nucleus	31.71	35.14
CDY68877	Canola	cytosol, mitochondrion	34.15	35.0
CDY06521	Canola	cytosol, plastid	34.15	35.0
CDY26882	Canola	cytosol	29.27	33.1
CDY08368	Canola	cytosol	31.71	32.7
CDY11958	Canola	cytosol	33.54	31.79
CDY54372	Canola	cytosol	29.27	31.37
CDX81788	Canola	cytosol	29.27	31.37
CDY35126	Canola	cytosol	29.27	31.37
CDX88485	Canola	cytosol	29.27	31.37
CDX83936	Canola	cytosol	29.27	31.37
CDX87428	Canola	cytosol	29.27	31.37
CDY40025	Canola	cytosol	29.27	31.37
CDY14587	Canola	cytosol	29.27	31.17
CDY57941	Canola	cytosol	29.27	30.97
CDX96802	Canola	cytosol	28.66	30.72
CDY54342	Canola	cytosol	33.54	29.89
CDY38184	Canola	cytosol	31.1	28.33
CDX79272	Canola	cytosol	28.66	27.65
CDY30726	Canola	mitochondrion, nucleus	23.78	26.0
CDY66232	Canola	mitochondrion, nucleus	23.78	26.0
CDY36778	Canola	cytosol	32.93	24.88
CDY38761	Canola	mitochondrion	22.56	24.34
CDY11654	Canola	mitochondrion	22.56	24.34
CDY68969	Canola	mitochondrion	20.73	23.45
CDY03040	Canola	mitochondrion, nucleus	20.12	23.4
CDY06520	Canola	cytosol	21.95	23.23
CDY39315	Canola	mitochondrion	20.73	22.37
CDY59253	Canola	mitochondrion	23.17	20.77
CDY23617	Canola	plastid	23.17	20.77
CDY39254	Canola	cytosol	13.41	18.97
CDX96859	Canola	mitochondrion	18.9	16.4
CDX84034	Canola	nucleus	10.37	15.89

Protein Annotations

EnsemblPlants:CDX73344	EnsemblPlantsGene:GSBRNA2T00106485001	Gene3D:3.10.110.10	GO:A0A078CAW6	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	MetaCyc:PWY-7511	PANTHER:PTHR24068	PANTHER:PTHR24068:SF120
PFAM:PF00179	PFscan:PS50127	ProteinID:CDX73344	ProteinID:CDX73344.1	ScanProsite:PS00183	SMART:SM00212
SUPFAM:SSF54495	UniParc:UPI0004EEE218	UniPathway:UPA00143	MapMan:35.1	:	:

Description

BnaC05g27620D

Coordinates

chrLK031798:+:1971112..1972527

Molecular Weight (calculated)

18388.6 Da

IEP (calculated)

10.060

GRAVY (calculated)

-0.068

Length

164 amino acids

Sequence
(BLAST)

001: MSIEKKAMQR IEKEFKVMTS KDSLYSIGYI DIKFPKNYPF TAPKFTFKTQ IYHPNINSEG SICLDILKDK WSPPLTVLLS ITSLLADPNP DGPLVGEIGE
101: LFKKSFRVHP SMFSPRFSKT RLARQLDDLS SLTPAAFPLA GVAPIRCSHG LPLLLWLSTR FLGG

Best Arabidopsis Sequence Match ( AT1G36340.1 )
(BLAST)

001: MFKKMDKKAA QRIAMEYRAM ISKESLFSIG QNSNNIYEWT AVIRGPDGTP YEGGMFNLSI KFPTDYPFKP PKFTFKTPIY HPNINDEGSI CMNILKDKWT
101: PALMVEKVLL SILLLLEKPN PDDPLVPEIG QLFKNNRFQF DQRAREFTAR HANN

Arabidopsis Description

UBC31Probable ubiquitin-conjugating enzyme E2 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8X7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.