CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G56150.1	Thale cress	cytosol, nucleus, peroxisome	80.35	93.92
CDY17396	Canola	cytosol	78.61	91.89
CDY51965	Canola	cytosol	78.61	91.89
CDX76970	Canola	cytosol	78.03	91.22
CDX96210	Canola	cytosol	77.46	90.54
CDY47067	Canola	cytosol	77.46	90.54
CDY49174	Canola	cytosol	77.46	90.54
CDY25571	Canola	cytosol	76.88	89.86
CDY14388	Canola	cytosol	76.88	89.86
CDY34409	Canola	cytosol	76.88	89.86
CDY35636	Canola	cytosol	76.88	89.86
CDY68877	Canola	cytosol, mitochondrion	82.66	89.38
CDY06521	Canola	cytosol, plastid	82.66	89.38
CDY02238	Canola	cytosol	69.94	81.76
CDX71304	Canola	cytosol, mitochondrion, nucleus	69.94	81.76
CDX89747	Canola	cytosol	69.36	81.08
CDY31408	Canola	cytosol	69.36	81.08
CDY36778	Canola	cytosol	98.84	78.8
CDY39254	Canola	cytosol	52.6	78.45
CDY08368	Canola	cytosol	68.79	74.84
CDY54342	Canola	cytosol	77.46	72.83
CDY38184	Canola	cytosol	68.21	65.56
CDY06520	Canola	cytosol	52.02	58.06
CDY23674	Canola	cytosol	36.99	57.66
CDY37098	Canola	cytosol	36.99	57.66
CDX73346	Canola	cytosol	36.99	57.66
CDY40025	Canola	cytosol	42.2	47.71
CDY35126	Canola	cytosol	41.62	47.06
CDX81788	Canola	cytosol	41.62	47.06
CDY54372	Canola	cytosol	41.04	46.41
CDX96802	Canola	cytosol	41.04	46.41
CDX83936	Canola	cytosol	41.04	46.41
CDY65274	Canola	cytosol	38.73	45.89
CDX88485	Canola	cytosol	40.46	45.75
CDX87428	Canola	cytosol	40.46	45.75
CDY26882	Canola	cytosol	38.15	45.52
CDY14587	Canola	cytosol	40.46	45.45
CDY57941	Canola	cytosol	40.46	45.16
CDY39315	Canola	mitochondrion	36.99	42.11
CDY30726	Canola	mitochondrion, nucleus	36.42	42.0
CDY66232	Canola	mitochondrion, nucleus	36.42	42.0
CDY38761	Canola	mitochondrion	36.42	41.45
CDY11654	Canola	mitochondrion	36.42	41.45
CDX79272	Canola	cytosol	40.46	41.18
CDY03040	Canola	mitochondrion, nucleus	32.37	39.72
CDY23617	Canola	plastid	41.04	38.8
CDY59253	Canola	mitochondrion	41.04	38.8
CDX84034	Canola	nucleus	21.97	35.51
CDY68969	Canola	mitochondrion	29.48	35.17
CDX73344	Canola	cytosol	31.79	33.54
CDX96859	Canola	mitochondrion	34.1	31.22

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	GO:A0A078FIM8	UniProt:A0A078FIM8	EnsemblPlants:CDY11958	ProteinID:CDY11958
ProteinID:CDY11958.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00060807001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF117	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EDE182	:

Description

BnaC03g13840DBnaC03g13840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIM8]

Coordinates

chrLK032015:-:619894..621652

Molecular Weight (calculated)

19711.7 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.384

Length

173 amino acids

Sequence
(BLAST)

001: MRQFLFKIPE SLDDLPLWKQ RVQFKMASKR INKELRDLQR DPPVSCSAGP VGDDMFHWQA TIMGPTDSPF SGGVFLVSIH FPPDYPFKPP KVSFRTKVYH
101: PNINSNGSIC LDILKEQWSP ALTISKVLLS ICSLLTDPNP DDPLVPEIAH TYKTDRVKYE STARSWTQKY AMG

Best Arabidopsis Sequence Match ( AT5G56150.1 )
(BLAST)

001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG

Arabidopsis Description

UBC30UBC30 [Source:UniProtKB/TrEMBL;Acc:A0A178UMN8]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.