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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035605.1-P Field mustard cytosol 92.5 100.0
CDY68877 Canola cytosol, mitochondrion 98.75 98.75
AT5G56150.1 Thale cress cytosol, nucleus, peroxisome 87.5 94.59
CDY17396 Canola cytosol 83.75 90.54
CDY14388 Canola cytosol 83.75 90.54
CDY35636 Canola cytosol 83.75 90.54
CDY51965 Canola cytosol 83.75 90.54
CDY49174 Canola cytosol 83.12 89.86
CDX76970 Canola cytosol 83.12 89.86
CDX96210 Canola cytosol 83.12 89.86
CDY47067 Canola cytosol 83.12 89.86
CDY34409 Canola cytosol 82.5 89.19
CDY25571 Canola cytosol 82.5 89.19
CDY11958 Canola cytosol 89.38 82.66
CDY02238 Canola cytosol 75.0 81.08
CDX71304 Canola cytosol, mitochondrion, nucleus 75.0 81.08
CDX89747 Canola cytosol 74.38 80.41
CDY31408 Canola cytosol 74.38 80.41
CDY39254 Canola cytosol 55.62 76.72
CDY08368 Canola cytosol 73.75 74.21
CDY54342 Canola cytosol 83.12 72.28
CDY36778 Canola cytosol 88.75 65.44
CDY38184 Canola cytosol 73.12 65.0
CDY37098 Canola cytosol 41.25 59.46
CDY23674 Canola cytosol 41.25 59.46
CDX73346 Canola cytosol 41.25 59.46
CDY06520 Canola cytosol 56.88 58.71
CDY65274 Canola cytosol 43.12 47.26
CDY54372 Canola cytosol 44.38 46.41
CDX83936 Canola cytosol 44.38 46.41
CDY40025 Canola cytosol 44.38 46.41
CDX81788 Canola cytosol 43.75 45.75
CDY35126 Canola cytosol 43.75 45.75
CDX87428 Canola cytosol 43.75 45.75
CDX88485 Canola cytosol 43.75 45.75
CDY14587 Canola cytosol 43.75 45.45
CDY57941 Canola cytosol 43.75 45.16
CDX96802 Canola cytosol 43.12 45.1
CDY26882 Canola cytosol 40.62 44.83
CDY39315 Canola mitochondrion 40.62 42.76
CDY66232 Canola mitochondrion, nucleus 39.38 42.0
CDY30726 Canola mitochondrion, nucleus 39.38 42.0
CDY38761 Canola mitochondrion 39.38 41.45
CDY11654 Canola mitochondrion 39.38 41.45
CDX79272 Canola cytosol 43.75 41.18
CDY03040 Canola mitochondrion, nucleus 35.62 40.43
CDY23617 Canola plastid 44.38 38.8
CDY59253 Canola mitochondrion 44.38 38.8
CDY68969 Canola mitochondrion 33.12 36.55
CDX84034 Canola nucleus 24.38 36.45
CDX73344 Canola cytosol 35.0 34.15
CDX96859 Canola mitochondrion 36.88 31.22
Protein Annotations
EnsemblPlants:CDY06521EnsemblPlantsGene:GSBRNA2T00122633001Gene3D:3.10.110.10GO:A0A078EZH7InterPro:IPR000608InterPro:IPR016135
InterPro:UBQ-conjugat_E2InterPro:UBQ-conjugating_ASInterPro:UBQ-conjugating_enzyme/RWDMetaCyc:PWY-7511PANTHER:PTHR24068PANTHER:PTHR24068:SF117
PFAM:PF00179PFscan:PS50127ProteinID:CDY06521ProteinID:CDY06521.1ScanProsite:PS00183SMART:SM00212
SUPFAM:SSF54495UniParc:UPI0004EF219FUniPathway:UPA00143MapMan:19.2.2.5.2::
Description
BnaC02g12450D
Coordinates
chrLK031971:-:83950..85740
Molecular Weight (calculated)
17852.5 Da
IEP (calculated)
8.323
GRAVY (calculated)
-0.240
Length
160 amino acids
Sequence
(BLAST)
001: MICQAAVRTI QAMASKRINK ELRDLQRDPP VSCSAGPVGD DMFHWQATIM GPSDSPFAGG VFLVSIHFPP DYPFKPPKVS FRTKVYHPNI NSNGSICLDI
101: LKEQWSPALT VSKVLLSICS LLTDPNPDDP LVPEIAHMYK TDRVKYETTA RSWTQKYAMG
Best Arabidopsis Sequence Match ( AT5G56150.1 )
(BLAST)
001: MASKRINKEL RDLQRDPPVS CSAGPTGDDM FQWQATIMGP ADSPFAGGVF LVTIHFPPDY PFKPPKVAFR TKVYHPNINS NGSICLDILK EQWSPALTVS
101: KVLLSICSLL TDPNPDDPLV PEIAHIYKTD RVKYESTAQS WTQKYAMG
Arabidopsis Description
UBC30UBC30 [Source:UniProtKB/TrEMBL;Acc:A0A178UMN8]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.