Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17396 | Canola | cytosol | 56.13 | 58.78 |
| CDY51965 | Canola | cytosol | 56.13 | 58.78 |
| CDX76970 | Canola | cytosol | 55.48 | 58.11 |
| CDY34409 | Canola | cytosol | 54.84 | 57.43 |
| CDY25571 | Canola | cytosol | 54.84 | 57.43 |
| CDY68877 | Canola | cytosol, mitochondrion | 58.71 | 56.88 |
| CDY06521 | Canola | cytosol, plastid | 58.71 | 56.88 |
| CDY35636 | Canola | cytosol | 54.19 | 56.76 |
| CDY47067 | Canola | cytosol | 54.19 | 56.76 |
| CDY49174 | Canola | cytosol | 54.19 | 56.76 |
| CDY14388 | Canola | cytosol | 54.19 | 56.76 |
| CDX96210 | Canola | cytosol | 54.19 | 56.76 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 50.32 | 52.7 |
| CDY31408 | Canola | cytosol | 50.32 | 52.7 |
| CDY11958 | Canola | cytosol | 58.06 | 52.02 |
| CDY02238 | Canola | cytosol | 49.03 | 51.35 |
| CDY08368 | Canola | cytosol | 52.26 | 50.94 |
| CDX89747 | Canola | cytosol | 48.39 | 50.68 |
| CDY39254 | Canola | cytosol | 34.84 | 46.55 |
| CDY54342 | Canola | cytosol | 54.19 | 45.65 |
| CDY38184 | Canola | cytosol | 51.61 | 44.44 |
| CDY23674 | Canola | cytosol | 31.61 | 44.14 |
| CDX73346 | Canola | cytosol | 31.61 | 44.14 |
| CDY37098 | Canola | cytosol | 31.61 | 44.14 |
| CDY36778 | Canola | cytosol | 57.42 | 41.01 |
| CDY40025 | Canola | cytosol | 33.55 | 33.99 |
| CDX83936 | Canola | cytosol | 32.9 | 33.33 |
| CDX81788 | Canola | cytosol | 32.9 | 33.33 |
| CDY35126 | Canola | cytosol | 32.9 | 33.33 |
| CDY54372 | Canola | cytosol | 32.9 | 33.33 |
| CDX96802 | Canola | cytosol | 32.26 | 32.68 |
| CDX88485 | Canola | cytosol | 32.26 | 32.68 |
| CDX87428 | Canola | cytosol | 32.26 | 32.68 |
| CDY14587 | Canola | cytosol | 32.26 | 32.47 |
| CDY57941 | Canola | cytosol | 32.26 | 32.26 |
| CDY65274 | Canola | cytosol | 30.32 | 32.19 |
| CDY26882 | Canola | cytosol | 29.03 | 31.03 |
| CDX79272 | Canola | cytosol | 32.9 | 30.0 |
| CDY30726 | Canola | mitochondrion, nucleus | 28.39 | 29.33 |
| CDY66232 | Canola | mitochondrion, nucleus | 28.39 | 29.33 |
| CDY23617 | Canola | plastid | 34.19 | 28.96 |
| CDY59253 | Canola | mitochondrion | 34.19 | 28.96 |
| CDY39315 | Canola | mitochondrion | 28.39 | 28.95 |
| CDY38761 | Canola | mitochondrion | 27.74 | 28.29 |
| CDY11654 | Canola | mitochondrion | 27.74 | 28.29 |
| CDY03040 | Canola | mitochondrion, nucleus | 24.52 | 26.95 |
| CDY68969 | Canola | mitochondrion | 23.87 | 25.52 |
| CDX84034 | Canola | nucleus | 16.77 | 24.3 |
| CDX96859 | Canola | mitochondrion | 28.39 | 23.28 |
| CDX73344 | Canola | cytosol | 23.23 | 21.95 |
Protein Annotations
| EnsemblPlants:CDY06520 | EnsemblPlantsGene:GSBRNA2T00122632001 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF117 | PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDY06520 |
| ProteinID:CDY06520.1 | SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI0004EE4DB1 | MapMan:35.1 | : |
Description
BnaC02g12440D
Coordinates
chrLK031971:-:82662..83546
Molecular Weight (calculated)
17650.9 Da
IEP (calculated)
4.831
GRAVY (calculated)
-0.049
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLGPVEDDD LFHWQATIMG PADSPFEGGV FFLSVHFPPN YPSRPPEVSL LTKVYHPNIN SDDGSIWIDI LRQNWSPALT LSKVIISLFH FHTHDSASTT
101: TSCCSVMLWS CLCPFFSVYT NPDEALVPEI AHIYKTDRAK YETTARFWTQ MYAMD
101: TSCCSVMLWS CLCPFFSVYT NPDEALVPEI AHIYKTDRAK YETTARFWTQ MYAMD
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.