CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029252.1-P	Field mustard	mitochondrion, nucleus	100.0	100.0
CDY30726	Canola	mitochondrion, nucleus	100.0	100.0
AT5G62540.1	Thale cress	nucleus	91.33	91.33
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	89.33	88.16
CDY38761	Canola	mitochondrion	89.33	88.16
CDY11654	Canola	mitochondrion	89.33	88.16
CDY39315	Canola	mitochondrion	86.0	84.87
CDY03040	Canola	mitochondrion, nucleus	78.67	83.69
CDX84034	Canola	nucleus	54.0	75.7
CDY68969	Canola	mitochondrion	64.0	66.21
CDX96859	Canola	mitochondrion	78.67	62.43
Zm00001d007897_P002	Maize	mitochondrion	88.0	61.68
CDX96210	Canola	cytosol	44.67	45.27
CDY49174	Canola	cytosol	44.67	45.27
CDY47067	Canola	cytosol	44.67	45.27
CDY35636	Canola	cytosol	44.67	45.27
CDY14388	Canola	cytosol	44.67	45.27
CDY34409	Canola	cytosol	42.67	43.24
CDY25571	Canola	cytosol	42.67	43.24
CDY51965	Canola	cytosol	41.33	41.89
CDX76970	Canola	cytosol	41.33	41.89
CDY17396	Canola	cytosol	41.33	41.89
CDX71304	Canola	cytosol, mitochondrion, nucleus	40.67	41.22
CDY31408	Canola	cytosol	40.67	41.22
CDY02238	Canola	cytosol	40.67	41.22
CDX89747	Canola	cytosol	40.0	40.54
CDX73346	Canola	cytosol	30.0	40.54
CDY23674	Canola	cytosol	30.0	40.54
CDY37098	Canola	cytosol	30.0	40.54
CDY68877	Canola	cytosol, mitochondrion	42.0	39.38
CDY06521	Canola	cytosol, plastid	42.0	39.38
CDY08368	Canola	cytosol	40.67	38.36
CDY11958	Canola	cytosol	42.0	36.42
CDY54342	Canola	cytosol	44.67	36.41
CDY35126	Canola	cytosol	36.67	35.95
CDX83936	Canola	cytosol	36.67	35.95
CDX81788	Canola	cytosol	36.67	35.95
CDY54372	Canola	cytosol	36.67	35.95
CDX96802	Canola	cytosol	36.0	35.29
CDX87428	Canola	cytosol	36.0	35.29
CDY40025	Canola	cytosol	36.0	35.29
CDX88485	Canola	cytosol	36.0	35.29
CDY14587	Canola	cytosol	36.0	35.06
CDY26882	Canola	cytosol	33.33	34.48
CDY38184	Canola	cytosol	40.67	33.89
CDY57941	Canola	cytosol	34.67	33.55
CDX79272	Canola	cytosol	36.67	32.35
CDY65274	Canola	cytosol	31.33	32.19
CDY39254	Canola	cytosol	22.67	29.31
CDY06520	Canola	cytosol	29.33	28.39
CDY36778	Canola	cytosol	40.67	28.11
CDY59253	Canola	mitochondrion	32.0	26.23
CDY23617	Canola	plastid	31.33	25.68
CDX73344	Canola	cytosol	26.0	23.78

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:A0A078GYZ3	UniProt:A0A078GYZ3	ProteinID:CDY30726.1	EnsemblPlants:CDY66232
ProteinID:CDY66232	ProteinID:CDY66232.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00052344001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF7	MetaCyc:PWY-7511	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0001BA8296

Description

BnaAnng21880DBnaA02g33480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYZ3]

Coordinates

chrLK035154:+:16457..18012

Molecular Weight (calculated)

17133.3 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.482

Length

150 amino acids

Sequence
(BLAST)

001: MATPARKRLM WDFKRLQKDP PLGISGAPQD NNIMHWNALI FGPDDSPWDG GTFKLTLQFT EDYPNKPPVV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVSAILTSIQ SLLCDPNPNS PANSEAARLF SENKREYNRK VMEIVEQSYA

Best Arabidopsis Sequence Match ( AT5G62540.1 )
(BLAST)

001: MTTPAKKRLM WDFKRLQKDP PVGISGAPQD NNIMHWNALI FGPEDTPWDG GTFKLTLHFT EDYPNKPPIV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAVLTSIQ SLLCDPNPDS PANAEAARLF SENKREYNRK VIEIVEQSYV

Arabidopsis Description

UBC3UBC3 [Source:UniProtKB/TrEMBL;Acc:A0A178ULQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.