CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	94.33	87.5
KRH69329	Soybean	mitochondrion	92.91	86.18
KRH74802	Soybean	mitochondrion	92.2	85.53
CDY39315	Canola	mitochondrion	92.2	85.53
CDY38761	Canola	mitochondrion	90.78	84.21
CDY11654	Canola	mitochondrion	90.78	84.21
CDX84034	Canola	nucleus	63.12	83.18
CDY30726	Canola	mitochondrion, nucleus	83.69	78.67
CDY66232	Canola	mitochondrion, nucleus	83.69	78.67
VIT_01s0026g01770.t01	Wine grape	plastid	94.33	69.63
CDY68969	Canola	mitochondrion	63.12	61.38
CDX96859	Canola	mitochondrion	82.27	61.38
CDY35636	Canola	cytosol	40.43	38.51
CDY47067	Canola	cytosol	40.43	38.51
CDY49174	Canola	cytosol	40.43	38.51
CDY14388	Canola	cytosol	40.43	38.51
CDX96210	Canola	cytosol	40.43	38.51
CDY23674	Canola	cytosol	29.79	37.84
CDX73346	Canola	cytosol	29.08	36.94
CDY37098	Canola	cytosol	29.08	36.94
CDY25571	Canola	cytosol	38.3	36.49
CDY34409	Canola	cytosol	38.3	36.49
CDX76970	Canola	cytosol	37.59	35.81
CDY51965	Canola	cytosol	37.59	35.81
CDY17396	Canola	cytosol	37.59	35.81
CDY06521	Canola	cytosol, plastid	40.43	35.62
CDY68877	Canola	cytosol, mitochondrion	40.43	35.62
CDX71304	Canola	cytosol, mitochondrion, nucleus	36.88	35.14
CDY31408	Canola	cytosol	36.88	35.14
CDY02238	Canola	cytosol	36.17	34.46
CDX89747	Canola	cytosol	35.46	33.78
CDY11958	Canola	cytosol	39.72	32.37
CDY08368	Canola	cytosol	36.17	32.08
CDY35126	Canola	cytosol	34.75	32.03
CDY54372	Canola	cytosol	34.75	32.03
CDY40025	Canola	cytosol	34.75	32.03
CDX81788	Canola	cytosol	34.75	32.03
CDX83936	Canola	cytosol	34.75	32.03
CDX88485	Canola	cytosol	34.04	31.37
CDX96802	Canola	cytosol	34.04	31.37
CDX87428	Canola	cytosol	34.04	31.37
CDY14587	Canola	cytosol	34.04	31.17
CDY26882	Canola	cytosol	31.91	31.03
CDY54342	Canola	cytosol	40.43	30.98
CDY57941	Canola	cytosol	34.04	30.97
CDX79272	Canola	cytosol	35.46	29.41
CDY65274	Canola	cytosol	29.79	28.77
CDY38184	Canola	cytosol	36.17	28.33
CDY39254	Canola	cytosol	22.7	27.59
CDY36778	Canola	cytosol	38.3	24.88
CDY06520	Canola	cytosol	26.95	24.52
CDY59253	Canola	mitochondrion	31.21	24.04
CDY23617	Canola	plastid	30.5	23.5
CDX73344	Canola	cytosol	23.4	20.12

Protein Annotations

EnsemblPlants:CDY03040	EnsemblPlantsGene:GSBRNA2T00115371001	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR43898	PANTHER:PTHR43898:SF5	PFAM:PF00179	PFscan:PS50127	ProteinID:CDY03040
ProteinID:CDY03040.1	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0004EF04F8	MapMan:19.2.2.1.4

Description

BnaC07g21870D

Coordinates

chrLK031939:-:549620..550863

Molecular Weight (calculated)

15947.7 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.568

Length

141 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKTTYI YADGSICLDI LQNQWSPIYD VAAILTSIQS
101: LLCDPNPNSP ANSEAARMFS ESKREYNRRV REVVEPSWTA D

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.