Factsheet for VIT_01s0026g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 3
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56939	Soybean	mitochondrion, nucleus	79.58	100.0
KRH63396	Soybean	mitochondrion, nucleus	79.58	100.0
KRH03443	Soybean	mitochondrion, nucleus	79.06	99.34
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	79.06	99.34
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	78.53	98.68
KRH69329	Soybean	mitochondrion	78.01	98.03
KRH74802	Soybean	mitochondrion	76.44	96.05
CDY03040	Canola	mitochondrion, nucleus	69.63	94.33
VIT_02s0025g01050.t01	Wine grape	cytosol	34.03	43.92
VIT_16s0050g02410.t01	Wine grape	cytosol	34.03	43.92
VIT_08s0040g00040.t01	Wine grape	cytosol	34.03	43.92
VIT_15s0046g01400.t01	Wine grape	cytosol	34.03	43.92
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	49.74	43.78
VIT_19s0015g01190.t01	Wine grape	cytosol	33.51	43.24
VIT_06s0004g08200.t01	Wine grape	cytosol	33.51	43.24
VIT_03s0038g02390.t01	Wine grape	cytosol	33.51	43.24
VIT_19s0014g01460.t01	Wine grape	cytosol	29.84	36.77
VIT_12s0028g02220.t01	Wine grape	extracellular	29.84	30.98
VIT_06s0004g00730.t01	Wine grape	plastid	24.08	26.14

Protein Annotations

EntrezGene:100261243	wikigene:100261243	EntrezGene:100265550	wikigene:100265550	MapMan:19.2.2.1.4	Gene3D:3.10.110.10
ProteinID:CBI32005	ProteinID:CBI32005.3	UniProt:D7TND2	EMBL:FN596002	GO:GO:0000166	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0016574	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161
GO:GO:0061630	InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100261243	wikigene:LOC100261243	PFAM:PF00179
ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF8	SMART:SM00212	SUPFAM:SSF54495
TIGR:TC52256	TIGR:TC57890	EntrezGene:UBC2	wikigene:UBC2	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0001BE3C00	ArrayExpress:VIT_01s0026g01770	EnsemblPlantsGene:VIT_01s0026g01770	EnsemblPlants:VIT_01s0026g01770.t01	unigene:Vvi.7559
RefSeq:XP_002277403	RefSeq:XP_002277403.1	RefSeq:XP_002277449	RefSeq:XP_002277449.1	RefSeq:XP_002282719	RefSeq:XP_002282719.1
RefSeq:XP_003633840	RefSeq:XP_003633840.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:11008741..11013297

Molecular Weight (calculated)

21715.8 Da

IEP (calculated)

9.425

GRAVY (calculated)

-0.546

Length

191 amino acids

Sequence
(BLAST)

001: MESYTYGARL QIGGNFPAKS FSLSPRIKPT RRVSLQAVRM STPARKRLMR DFKRLQQDPP AGISGAPQDN NIMLWNAVIF GPDDTPWDGG TFKLTLQFTE
101: DYPNKPPTVR FVSRMFHPNI YADGSICLDI LQNQWSPIYD VAAILTSIQS LLCDPNPNSP ANSEAARMFS ENKREYNRRV REIVEQSWTA D

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.