Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98036 | Sorghum | mitochondrion, nucleus | 42.86 | 61.18 |
| Os07t0166800-02 | Rice | mitochondrion, nucleus | 42.86 | 61.18 |
| TraesCS2A01G247700.1 | Wheat | nucleus | 42.4 | 60.53 |
| Os03t0791800-01 | Rice | mitochondrion, nucleus | 42.4 | 60.53 |
| VIT_17s0000g05820.t01 | Wine grape | mitochondrion, nucleus | 41.94 | 59.87 |
| KRH45858 | Soybean | mitochondrion, nucleus | 41.94 | 59.87 |
| Os05t0182500-02 | Rice | mitochondrion, nucleus | 41.94 | 59.87 |
| PGSC0003DMT400046771 | Potato | mitochondrion, nucleus | 41.94 | 59.87 |
| Solyc03g113100.2.1 | Tomato | mitochondrion, nucleus | 41.94 | 59.87 |
| TraesCS1B01G140300.1 | Wheat | mitochondrion | 41.94 | 59.87 |
| VIT_08s0032g00310.t01 | Wine grape | mitochondrion, nucleus | 41.47 | 59.21 |
| TraesCS1D01G121800.1 | Wheat | mitochondrion, nucleus | 41.47 | 59.21 |
| CDY11654 | Canola | mitochondrion | 41.01 | 58.55 |
| CDY38761 | Canola | mitochondrion | 41.01 | 58.55 |
| Bra016264.1-P | Field mustard | mitochondrion | 41.01 | 58.55 |
| GSMUA_Achr6P04830_001 | Banana | cytosol, nucleus, plastid | 38.25 | 58.04 |
| Zm00001d034404_P001 | Maize | mitochondrion | 41.47 | 55.56 |
| VIT_01s0026g01770.t01 | Wine grape | plastid | 43.78 | 49.74 |
| HORVU1Hr1G027600.1 | Barley | plastid | 42.4 | 38.98 |
| VIT_03s0038g02390.t01 | Wine grape | cytosol | 21.66 | 31.76 |
| VIT_02s0025g01050.t01 | Wine grape | cytosol | 20.74 | 30.41 |
| VIT_08s0040g00040.t01 | Wine grape | cytosol | 20.74 | 30.41 |
| VIT_15s0046g01400.t01 | Wine grape | cytosol | 20.74 | 30.41 |
| VIT_16s0050g02410.t01 | Wine grape | cytosol | 20.74 | 30.41 |
| VIT_06s0004g08200.t01 | Wine grape | cytosol | 20.28 | 29.73 |
| VIT_19s0015g01190.t01 | Wine grape | cytosol | 20.28 | 29.73 |
| VIT_19s0014g01460.t01 | Wine grape | cytosol | 19.82 | 27.74 |
| VIT_12s0028g02220.t01 | Wine grape | extracellular | 19.82 | 23.37 |
| VIT_06s0004g00730.t01 | Wine grape | plastid | 18.89 | 23.3 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | ProteinID:CCB47513 | ProteinID:CCB47513.1 | UniProt:F6H5P2 | EMBL:FN595239 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016574 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031625 | GO:GO:0043161 |
| GO:GO:0061630 | InterPro:IPR000608 | InterPro:IPR016135 | PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43898 |
| PANTHER:PTHR43898:SF2 | SMART:SM00212 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000210A68E |
| ArrayExpress:VIT_14s0108g00140 | EnsemblPlantsGene:VIT_14s0108g00140 | EnsemblPlants:VIT_14s0108g00140.t01 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr14:+:28935832..28941505
Molecular Weight (calculated)
24721.0 Da
IEP (calculated)
8.215
GRAVY (calculated)
-0.107
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MFCFPTFCLA PNGALTELFD AAVRMSTPSR KRLMRDFKRL QQDPPAGISG APHDNNIMLW NAVIFGPDDT PWDGGTFKLT LQFTEEYPNK PPTVRFVSRM
101: FHPNNNCEDW QKDDNPLWHL YMPMEASVWI FYRTSGVPYM MLLLFLLLSS HCFVIPTQTR PLIQKLHGCL VRTSASTTEE SVKLLSRAGQ RTNSLSGCFR
201: ACCAEWISLI LPPARVV
101: FHPNNNCEDW QKDDNPLWHL YMPMEASVWI FYRTSGVPYM MLLLFLLLSS HCFVIPTQTR PLIQKLHGCL VRTSASTTEE SVKLLSRAGQ RTNSLSGCFR
201: ACCAEWISLI LPPARVV
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
Arabidopsis Description
UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.