Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 4
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
27664331
|
msms PMID:
27664331
doi
Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P04790_001 | Banana | cytosol | 80.98 | 97.39 |
| GSMUA_Achr1P27440_001 | Banana | cytosol | 79.89 | 96.08 |
| GSMUA_Achr9P06450_001 | Banana | cytosol | 84.78 | 90.17 |
| GSMUA_Achr6P26870_001 | Banana | cytosol | 74.46 | 89.54 |
| VIT_19s0014g01460.t01 | Wine grape | cytosol | 74.46 | 88.39 |
| GSMUA_Achr4P31060_001 | Banana | cytosol, extracellular | 36.41 | 81.71 |
| VIT_06s0004g08200.t01 | Wine grape | cytosol | 39.67 | 49.32 |
| VIT_15s0046g01400.t01 | Wine grape | cytosol | 39.67 | 49.32 |
| VIT_08s0040g00040.t01 | Wine grape | cytosol | 39.67 | 49.32 |
| VIT_03s0038g02390.t01 | Wine grape | cytosol | 39.13 | 48.65 |
| VIT_02s0025g01050.t01 | Wine grape | cytosol | 39.13 | 48.65 |
| VIT_16s0050g02410.t01 | Wine grape | cytosol | 39.13 | 48.65 |
| VIT_19s0015g01190.t01 | Wine grape | cytosol | 38.59 | 47.97 |
| VIT_17s0000g05820.t01 | Wine grape | mitochondrion, nucleus | 31.52 | 38.16 |
| VIT_08s0032g00310.t01 | Wine grape | mitochondrion, nucleus | 30.98 | 37.5 |
| VIT_06s0004g00730.t01 | Wine grape | plastid | 32.61 | 34.09 |
| VIT_01s0026g01770.t01 | Wine grape | plastid | 30.98 | 29.84 |
| VIT_14s0108g00140.t01 | Wine grape | cytosol, plastid | 23.37 | 19.82 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | ProteinID:CCB47364 | ProteinID:CCB47364.1 | UniProt:F6H4Z9 | EMBL:FN595235 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006301 |
| GO:GO:0006464 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0031625 | GO:GO:0061630 | GO:GO:0070534 | InterPro:IPR000608 | InterPro:IPR016135 |
| PFAM:PF00179 | PFscan:PS50127 | PANTHER:PTHR43902 | PANTHER:PTHR43902:SF4 | SMART:SM00212 | SUPFAM:SSF54495 |
| InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0002109239 | ArrayExpress:VIT_12s0028g02220 | EnsemblPlantsGene:VIT_12s0028g02220 | EnsemblPlants:VIT_12s0028g02220.t01 |
Description
No Description!
Coordinates
chr12:+:3005998..3011199
Molecular Weight (calculated)
21058.5 Da
IEP (calculated)
6.278
GRAVY (calculated)
-0.220
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKARDLLF PLIIFTYFKT
101: EIYEVSEHKI DFFMQLGRIC LDILKDKWSP ALQIRTVLLS IQALLSAPNP DDPLSENIAK HWKSNEAEAV ETAKEWTRLY ASGA
101: EIYEVSEHKI DFFMQLGRIC LDILKDKWSP ALQIRTVLLS IQALLSAPNP DDPLSENIAK HWKSNEAEAV ETAKEWTRLY ASGA
001: MANSNLPRRI IKETQRLLSE PAPGISASPS EENMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVE TAKEWTRLYA SGA
Arabidopsis Description
UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.