Factsheet for VIT_19s0014g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G78870.2	Thale cress	cytosol	89.03	90.2
KRH21984	Soybean	endoplasmic reticulum, nucleus	89.03	90.2
KRH26227	Soybean	cytosol	88.39	89.54
Bra026018.1-P	Field mustard	cytosol	88.39	89.54
KRH55097	Soybean	endoplasmic reticulum	88.39	89.54
PGSC0003DMT400054795	Potato	cytosol	88.39	89.54
CDX81788	Canola	cytosol	88.39	89.54
CDY35126	Canola	cytosol	88.39	89.54
Solyc10g007260.2.1	Tomato	plastid	88.39	89.54
Solyc07g062570.2.1	Tomato	plastid	88.39	89.54
Bra016626.1-P	Field mustard	cytosol	87.74	88.89
PGSC0003DMT400032251	Potato	cytosol	87.74	88.89
CDY54372	Canola	cytosol	87.74	88.89
CDY40025	Canola	cytosol	87.74	88.89
CDX83936	Canola	cytosol	87.74	88.89
TraesCS3A01G271800.1	Wheat	cytosol	87.74	88.89
TraesCS3B01G305500.1	Wheat	mitochondrion	87.74	88.89
Bra026700.1-P	Field mustard	cytosol	87.74	88.89
TraesCS3D01G271400.1	Wheat	cytosol	87.74	88.89
CDY26882	Canola	cytosol	82.58	88.28
TraesCS1A01G392400.1	Wheat	cytosol	87.1	88.24
TraesCS1D01G400600.1	Wheat	cytosol	87.1	88.24
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	87.1	88.24
Bra008383.1-P	Field mustard	cytosol	87.1	88.24
CDX87428	Canola	cytosol	87.1	88.24
CDX96802	Canola	cytosol	87.1	88.24
GSMUA_Achr4P31050_001	Banana	cytosol	43.23	88.16
CDY14587	Canola	cytosol	87.1	87.66
CDX88485	Canola	cytosol	86.45	87.58
EES03421	Sorghum	cytosol	86.45	87.58
Bra035071.1-P	Field mustard	cytosol	78.06	87.05
KXG35379	Sorghum	cytosol	85.16	86.27
TraesCS5B01G179700.1	Wheat	cytosol	85.16	86.27
TraesCS5D01G186100.1	Wheat	cytosol	85.16	86.27
TraesCS5A01G181700.1	Wheat	cytosol	85.16	86.27
CDY57941	Canola	cytosol	85.81	85.81
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	85.16	85.16
Zm00001d009552_P002	Maize	cytosol	87.1	84.91
AT1G16890.3	Thale cress	cytosol	87.74	83.95
Zm00001d038995_P001	Maize	cytosol	87.74	83.44
Zm00001d043905_P003	Maize	cytosol	85.81	78.7
CDX79272	Canola	cytosol	85.81	78.24
HORVU1Hr1G086610.1	Barley	cytosol, plastid	87.1	77.59
KRH27335	Soybean	endoplasmic reticulum	72.9	74.83
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	45.81	74.74
VIT_12s0028g02220.t01	Wine grape	extracellular	88.39	74.46
HORVU1Hr1G086480.1	Barley	mitochondrion	84.52	68.23
HORVU3Hr1G061790.1	Barley	cytosol	87.74	67.0
Zm00001d011565_P002	Maize	cytosol, mitochondrion	85.81	66.83
TraesCS1B01G420600.1	Wheat	vacuole	74.19	56.1
VIT_08s0040g00040.t01	Wine grape	cytosol	43.23	45.27
VIT_06s0004g08200.t01	Wine grape	cytosol	43.23	45.27
VIT_15s0046g01400.t01	Wine grape	cytosol	43.23	45.27
VIT_19s0015g01190.t01	Wine grape	cytosol	43.23	45.27
VIT_16s0050g02410.t01	Wine grape	cytosol	42.58	44.59
VIT_03s0038g02390.t01	Wine grape	cytosol	42.58	44.59
VIT_02s0025g01050.t01	Wine grape	cytosol	42.58	44.59
VIT_17s0000g05820.t01	Wine grape	mitochondrion, nucleus	37.42	38.16
VIT_08s0032g00310.t01	Wine grape	mitochondrion, nucleus	36.77	37.5
VIT_06s0004g00730.t01	Wine grape	plastid	35.48	31.25
VIT_01s0026g01770.t01	Wine grape	plastid	36.77	29.84
VIT_14s0108g00140.t01	Wine grape	cytosol, plastid	27.74	19.82

Protein Annotations

EntrezGene:100255523	wikigene:100255523	MapMan:19.2.2.1.4	Gene3D:3.10.110.10	ProteinID:CCB46261	ProteinID:CCB46261.1
UniProt:F6H2P3	EMBL:FN595229	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006301	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	GO:GO:0070534	InterPro:IPR000608	InterPro:IPR016135	EntrezGene:LOC100255523	wikigene:LOC100255523
PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	SMART:SM00212
SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002109227	ArrayExpress:VIT_19s0014g01460
EnsemblPlantsGene:VIT_19s0014g01460	EnsemblPlants:VIT_19s0014g01460.t01	RefSeq:XP_002285421	RefSeq:XP_002285421.1	:	:

Description

No Description!

Coordinates

chr19:+:1528717..1547189

Molecular Weight (calculated)

17428.1 Da

IEP (calculated)

6.786

GRAVY (calculated)

-0.352

Length

155 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKTNEAEARR NGLACMQVAH DGDDM

Best Arabidopsis Sequence Match ( AT1G78870.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVD TAKEWTRLYA SGA

Arabidopsis Description

UBC35UBC35 [Source:UniProtKB/TrEMBL;Acc:A0A178WFI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.