Factsheet for TraesCS1B01G420600.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 6
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	42.44	91.58
TraesCS1A01G392400.1	Wheat	cytosol	64.88	86.93
TraesCS1D01G400600.1	Wheat	cytosol	64.88	86.93
TraesCS3B01G305500.1	Wheat	mitochondrion	63.41	84.97
CDX87428	Canola	cytosol	63.41	84.97
Bra016626.1-P	Field mustard	cytosol	63.41	84.97
Solyc10g007260.2.1	Tomato	plastid	62.93	84.31
Bra008383.1-P	Field mustard	cytosol	62.93	84.31
CDX81788	Canola	cytosol	62.93	84.31
CDX83936	Canola	cytosol	62.93	84.31
Bra026018.1-P	Field mustard	cytosol	62.93	84.31
CDX88485	Canola	cytosol	62.93	84.31
CDX96802	Canola	cytosol	62.93	84.31
Bra026700.1-P	Field mustard	cytosol	62.93	84.31
CDY35126	Canola	cytosol	62.93	84.31
CDY54372	Canola	cytosol	62.93	84.31
CDY26882	Canola	cytosol	59.51	84.14
CDY14587	Canola	cytosol	62.93	83.77
PGSC0003DMT400032251	Potato	cytosol	62.44	83.66
KRH55097	Soybean	endoplasmic reticulum	62.44	83.66
PGSC0003DMT400054795	Potato	cytosol	62.44	83.66
KRH26227	Soybean	cytosol	62.44	83.66
CDY40025	Canola	cytosol	62.44	83.66
KRH21984	Soybean	endoplasmic reticulum, nucleus	62.44	83.66
Bra035071.1-P	Field mustard	cytosol	56.59	83.45
Solyc07g062570.2.1	Tomato	plastid	61.95	83.01
AT1G78870.2	Thale cress	cytosol	61.95	83.01
AT1G16890.3	Thale cress	cytosol	64.39	81.48
CDY57941	Canola	cytosol	61.46	81.29
Zm00001d009552_P002	Maize	cytosol	62.44	80.5
TraesCS5B01G179700.1	Wheat	cytosol	60.0	80.39
Zm00001d038995_P001	Maize	cytosol	62.44	78.53
HORVU1Hr1G086610.1	Barley	cytosol, plastid	64.88	76.44
CDX79272	Canola	cytosol	62.44	75.29
VIT_19s0014g01460.t01	Wine grape	cytosol	56.1	74.19
HORVU1Hr1G086480.1	Barley	mitochondrion	64.88	69.27
GSMUA_Achr4P31050_001	Banana	cytosol	25.37	68.42
KRH27335	Soybean	endoplasmic reticulum	44.39	60.26
TraesCS3B01G266900.1	Wheat	cytosol	32.68	45.58
TraesCS7B01G239300.1	Wheat	cytosol, nucleus, peroxisome	32.68	45.27
TraesCS6B01G095200.1	Wheat	cytosol	32.68	44.97
TraesCS3B01G374500.1	Wheat	cytosol, nucleus, peroxisome	32.2	44.59
TraesCS5B01G174300.1	Wheat	cytosol	32.2	44.59
TraesCS1B01G311400.1	Wheat	cytosol, nucleus, peroxisome	32.2	44.59
TraesCS2B01G570100.1	Wheat	cytosol	31.71	43.92
TraesCS3B01G131500.2	Wheat	nucleus	26.83	36.18
TraesCS1B01G140300.1	Wheat	mitochondrion	25.85	34.87
TraesCS5B01G431100.1	Wheat	mitochondrion, nucleus	25.85	34.87
TraesCS2B01G270000.2	Wheat	nucleus	25.85	34.87
TraesCS2B01G220200.1	Wheat	plastid	28.78	30.73

Protein Annotations

EnsemblPlants:TraesCS1B01G420600.1	EnsemblPlantsGene:TraesCS1B01G420600	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4	PFAM:PF00179	PFscan:PS50127
ScanProsite:PS00183	SEG:seg	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	TMHMM:TMhelix
MapMan:19.2.2.1.4	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:643587156..643590805

Molecular Weight (calculated)

23257.3 Da

IEP (calculated)

8.918

GRAVY (calculated)

-0.051

Length

205 amino acids

Sequence
(BLAST)

001: MHHVCLCFVS LLYSYVLLHI SWHLIYAWLL AIGRHHRRRC HHGSCRRQTL SYHVTSFYLP GVAAKFLPGT PLATPGISAS PSEENMRYFN VMVLGPAQSP
101: YEGGVFKLEL FLPEEYPMAA PKVRFLTKIY HPNIDKLGRI CLDILKDKWS PALQIRTVLL SIQALLSAPN PDDPLSENVA KHWKSNEAEA VETAKEWTRM
201: YASGA

Best Arabidopsis Sequence Match ( AT1G16890.1 )
(BLAST)

001: MRYFNVMILG PTQSPYEGGV FKLELFLPEE YPMAAPKVRF LTKIYHPNID KLGRICLDIL KDKWSPALQI RTVLLSIQAL LSAPNPDDPL SENIAKHWKS
101: NEAEAVETAK EWTRLYASGA

Arabidopsis Description

UBC36Ubiquitin-conjugating enzyme 36 [Source:UniProtKB/TrEMBL;Acc:F4I615]
SUBAcon: [plastid,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.