Factsheet for Solyc07g062570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 4
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032251	Potato	cytosol	99.35	99.35
KRH21984	Soybean	endoplasmic reticulum, nucleus	99.35	99.35
AT1G78870.2	Thale cress	cytosol	98.69	98.69
Solyc10g007260.2.1	Tomato	plastid	98.69	98.69
CDY35126	Canola	cytosol	98.69	98.69
CDX81788	Canola	cytosol	98.69	98.69
Bra026018.1-P	Field mustard	cytosol	98.69	98.69
CDY40025	Canola	cytosol	98.04	98.04
Bra016626.1-P	Field mustard	cytosol	98.04	98.04
KRH26227	Soybean	cytosol	98.04	98.04
TraesCS3D01G271400.1	Wheat	cytosol	98.04	98.04
TraesCS3B01G305500.1	Wheat	mitochondrion	98.04	98.04
TraesCS3A01G271800.1	Wheat	cytosol	98.04	98.04
KRH55097	Soybean	endoplasmic reticulum	98.04	98.04
CDY54372	Canola	cytosol	98.04	98.04
CDX83936	Canola	cytosol	98.04	98.04
Bra026700.1-P	Field mustard	cytosol	98.04	98.04
EES03421	Sorghum	cytosol	97.39	97.39
CDX96802	Canola	cytosol	97.39	97.39
CDX87428	Canola	cytosol	97.39	97.39
CDY26882	Canola	cytosol	92.16	97.24
Bra035071.1-P	Field mustard	cytosol	88.24	97.12
Bra008383.1-P	Field mustard	cytosol	96.73	96.73
Os01t0673600-01	Rice	extracellular, plasma membrane, plastid	96.73	96.73
CDX88485	Canola	cytosol	96.73	96.73
CDY14587	Canola	cytosol	96.73	96.1
TraesCS1A01G392400.1	Wheat	cytosol	96.08	96.08
TraesCS1D01G400600.1	Wheat	cytosol	96.08	96.08
CDY57941	Canola	cytosol	96.08	94.84
KXG35379	Sorghum	cytosol	94.12	94.12
TraesCS5A01G181700.1	Wheat	cytosol	93.46	93.46
TraesCS5B01G179700.1	Wheat	cytosol	93.46	93.46
TraesCS5D01G186100.1	Wheat	cytosol	93.46	93.46
Zm00001d009552_P002	Maize	cytosol	96.73	93.08
AT1G16890.3	Thale cress	cytosol	98.04	92.59
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	93.46	92.26
Zm00001d038995_P001	Maize	cytosol	96.73	90.8
GSMUA_Achr4P31050_001	Banana	cytosol	45.1	90.79
VIT_19s0014g01460.t01	Wine grape	cytosol	89.54	88.39
Zm00001d043905_P003	Maize	cytosol	97.39	88.17
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	54.25	87.37
CDX79272	Canola	cytosol	96.08	86.47
HORVU1Hr1G086610.1	Barley	cytosol, plastid	96.08	84.48
KRH27335	Soybean	endoplasmic reticulum	73.86	74.83
HORVU1Hr1G086480.1	Barley	mitochondrion	93.46	74.48
Zm00001d011565_P002	Maize	cytosol, mitochondrion	96.73	74.37
HORVU3Hr1G061790.1	Barley	cytosol	98.04	73.89
TraesCS1B01G420600.1	Wheat	vacuole	83.01	61.95
Solyc08g081950.2.1	Tomato	cytosol	39.87	51.26
Solyc06g082600.2.1	Tomato	extracellular	47.06	48.65
Solyc06g007510.2.1	Tomato	cytosol	47.06	48.65
Solyc05g050230.2.1	Tomato	cytosol	46.41	47.97
Solyc10g011740.2.1	Tomato	cytosol	46.41	47.97
Solyc03g007470.2.1	Tomato	cytosol	46.41	47.97
Solyc01g095490.2.1	Tomato	cytosol	46.41	47.97
Solyc07g066080.2.1	Tomato	cytosol	45.75	47.3
Solyc08g008220.2.1	Tomato	cytosol	45.75	47.3
Solyc12g056100.1.1	Tomato	cytosol	45.75	47.3
Solyc02g083570.2.1	Tomato	cytosol	45.75	47.3
Solyc03g033410.2.1	Tomato	cytosol, mitochondrion	45.1	46.62
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	37.25	37.5
Solyc06g070980.2.1	Tomato	mitochondrion, nucleus	37.25	37.5
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	36.6	36.84
Solyc02g067420.2.1	Tomato	nucleus	35.95	36.18
Solyc01g005840.2.1	Tomato	plastid	37.25	31.49

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006301	GO:GO:0006464	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625
GO:GO:0061630	GO:GO:0070534	InterPro:IPR000608	InterPro:IPR016135	UniProt:K4CGU0	EMBL:KF496880
EMBL:KY246927	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43902	PANTHER:PTHR43902:SF4
SMART:SM00212	SUPFAM:SSF54495	EnsemblPlantsGene:Solyc07g062570.2	EnsemblPlants:Solyc07g062570.2.1	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000276B83F	:	:	:	:

Description

Fen-interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:K4CGU0]

Coordinates

chr7:+:65248941..65254480

Molecular Weight (calculated)

17234.8 Da

IEP (calculated)

7.508

GRAVY (calculated)

-0.303

Length

153 amino acids

Sequence
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEVEAVE TAKEWTRLYA SGA

Best Arabidopsis Sequence Match ( AT1G78870.2 )
(BLAST)

001: MANSNLPRRI IKETQRLLSE PAPGISASPS EDNMRYFNVM ILGPTQSPYE GGVFKLELFL PEEYPMAAPK VRFLTKIYHP NIDKLGRICL DILKDKWSPA
101: LQIRTVLLSI QALLSAPNPD DPLSENIAKH WKSNEAEAVD TAKEWTRLYA SGA

Arabidopsis Description

UBC35UBC35 [Source:UniProtKB/TrEMBL;Acc:A0A178WFI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.