Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- vacuole 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007470.2.1 | Tomato | cytosol | 97.3 | 97.3 |
| Solyc06g082600.2.1 | Tomato | extracellular | 96.62 | 96.62 |
| Solyc06g007510.2.1 | Tomato | cytosol | 96.62 | 96.62 |
| Solyc05g050230.2.1 | Tomato | cytosol | 95.95 | 95.95 |
| Solyc10g011740.2.1 | Tomato | cytosol | 95.95 | 95.95 |
| Solyc08g008220.2.1 | Tomato | cytosol | 95.95 | 95.95 |
| Solyc01g095490.2.1 | Tomato | cytosol | 95.27 | 95.27 |
| Solyc08g081950.2.1 | Tomato | cytosol | 76.35 | 94.96 |
| Solyc07g066080.2.1 | Tomato | cytosol | 90.54 | 90.54 |
| PGSC0003DMT400012799 | Potato | mitochondrion | 99.32 | 87.5 |
| Solyc02g083570.2.1 | Tomato | cytosol | 87.16 | 87.16 |
| Solyc03g033410.2.1 | Tomato | cytosol, mitochondrion | 85.14 | 85.14 |
| KRG89662 | Soybean | endoplasmic reticulum | 60.81 | 53.89 |
| Solyc10g007260.2.1 | Tomato | plastid | 47.97 | 46.41 |
| Solyc07g062570.2.1 | Tomato | plastid | 47.3 | 45.75 |
| Solyc02g087750.2.1 | Tomato | mitochondrion, nucleus | 43.92 | 42.76 |
| Solyc06g070980.2.1 | Tomato | mitochondrion, nucleus | 43.92 | 42.76 |
| Solyc03g113100.2.1 | Tomato | mitochondrion, nucleus | 43.24 | 42.11 |
| Solyc02g067420.2.1 | Tomato | nucleus | 43.24 | 42.11 |
| Solyc01g005840.2.1 | Tomato | plastid | 49.32 | 40.33 |
Protein Annotations
| MapMan:19.2.2.5.2 | Gene3D:3.10.110.10 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR000608 | InterPro:IPR016135 | EMBL:KY246902 |
| PFAM:PF00179 | ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR24068 | PANTHER:PTHR24068:SF78 | UniProt:Q42897 |
| SMART:SM00212 | SUPFAM:SSF54495 | EnsemblPlantsGene:Solyc12g056100.1 | EnsemblPlants:Solyc12g056100.1.1 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_AS |
| InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI00000ACAE7 | EMBL:X73419 | : | : | : |
Description
UBC8 [Source:UniProtKB/TrEMBL;Acc:Q42897]
Coordinates
chr12:-:62068830..62073130
Molecular Weight (calculated)
16522.9 Da
IEP (calculated)
8.073
GRAVY (calculated)
-0.279
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP ADSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYETTARS WTQKFAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RSKYETTARS WTQKFAMG
001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG
Arabidopsis Description
UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.