CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
vacuole 1
cytosol 1
nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53428	Soybean	cytosol	55.09	62.16
KRH64511	Soybean	cytosol	55.09	62.16
KRH68874	Soybean	cytosol	55.09	62.16
KRH18135	Soybean	cytosol	55.09	61.74
KRH15985	Soybean	cytosol	54.49	61.49
KRH40705	Soybean	cytosol	54.49	61.49
KRH72837	Soybean	cytosol	53.89	60.81
KRH17206	Soybean	cytosol	53.89	60.81
KRG98118	Soybean	cytosol	53.89	60.81
GSMUA_Achr9P05290_001	Banana	cytosol	53.89	60.81
KRH30665	Soybean	cytosol	53.89	60.81
Solyc12g056100.1.1	Tomato	cytosol	53.89	60.81
GSMUA_Achr8P27940_001	Banana	cytosol	53.29	60.14
GSMUA_Achr3P15810_001	Banana	cytosol	53.29	60.14
PGSC0003DMT400032059	Potato	cytosol	52.1	58.78
KRH24311	Soybean	cytosol	52.1	58.78
KRH29288	Soybean	cytosol	52.1	58.78
KRH45376	Soybean	cytosol	51.5	58.11
KRH07671	Soybean	cytosol	33.53	57.73
KRH00486	Soybean	cytosol	54.49	57.59
KRH33057	Soybean	cytosol, nucleus, peroxisome	50.3	56.76
Solyc08g081950.2.1	Tomato	cytosol	40.12	56.3
KRH07669	Soybean	cytosol, nucleus, peroxisome	49.1	55.41
PGSC0003DMT400012799	Potato	mitochondrion	53.29	52.98
GSMUA_Achr6P32020_001	Banana	mitochondrion, plastid	56.29	39.17
KRG99148	Soybean	mitochondrion	26.35	33.59
KRH42820	Soybean	plastid	32.34	30.68
KRH55097	Soybean	endoplasmic reticulum	26.95	29.41
KRH45858	Soybean	mitochondrion, nucleus	26.35	28.95
KRH56939	Soybean	mitochondrion, nucleus	26.35	28.95
KRH63396	Soybean	mitochondrion, nucleus	26.35	28.95
KRH69329	Soybean	mitochondrion	26.35	28.95
KRH74802	Soybean	mitochondrion	26.35	28.95
KRH26227	Soybean	cytosol	26.35	28.76
KRH54510	Soybean	cytosol, nucleus, plastid	19.76	28.45
KRH03443	Soybean	mitochondrion, nucleus	25.75	28.29
KRH21984	Soybean	endoplasmic reticulum, nucleus	25.75	28.1
KRH27335	Soybean	endoplasmic reticulum	25.15	27.81

Protein Annotations

MapMan:19.2.2.5.2	Gene3D:3.10.110.10	EMBL:ACUP02012241	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G038400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	InterPro:IPR000608	InterPro:IPR016135	UniProt:K7N197	EnsemblPlants:KRG89662
ProteinID:KRG89662	ProteinID:KRG89662.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR24068
PANTHER:PTHR24068:SF65	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	TMHMM:TMhelix	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002956BC0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr20:-:5969251..5973855

Molecular Weight (calculated)

18875.6 Da

IEP (calculated)

9.752

GRAVY (calculated)

-0.416

Length

167 amino acids

Sequence
(BLAST)

001: MASFRNAAIN IVERGRKEGK EGEWIDSSTA PDIYKSSFPS PKSLILFQSF FFFTFLSRSI IQNKKKKKEL KDLQKDPPTS CSAGPVAEDM FHWPTTIMGP
101: PDSPYARGVF LVTIHFPPDY PFKPTKVAFR TNVFHPNINS NGSICLDILK EQWSPALTIS KQQNDMG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.