CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
nucleus 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56939	Soybean	mitochondrion, nucleus	99.14	75.66
KRH63396	Soybean	mitochondrion, nucleus	99.14	75.66
KRH45858	Soybean	mitochondrion, nucleus	98.28	75.0
KRH03443	Soybean	mitochondrion, nucleus	98.28	75.0
KRH69329	Soybean	mitochondrion	97.41	74.34
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	96.55	73.68
KRH74802	Soybean	mitochondrion	94.83	72.37
CDY68969	Canola	mitochondrion	83.62	66.9
KRG99148	Soybean	mitochondrion	63.79	56.49
Zm00001d007897_P002	Maize	mitochondrion	93.97	50.93
KRH07671	Soybean	cytosol	31.9	38.14
KRH24311	Soybean	cytosol	45.69	35.81
KRH68874	Soybean	cytosol	45.69	35.81
KRH64511	Soybean	cytosol	45.69	35.81
KRH15985	Soybean	cytosol	45.69	35.81
KRH33057	Soybean	cytosol, nucleus, peroxisome	45.69	35.81
KRH40705	Soybean	cytosol	45.69	35.81
KRG98118	Soybean	cytosol	45.69	35.81
KRH53428	Soybean	cytosol	45.69	35.81
KRH18135	Soybean	cytosol	45.69	35.57
KRH30665	Soybean	cytosol	44.83	35.14
KRH72837	Soybean	cytosol	44.83	35.14
KRH45376	Soybean	cytosol	44.83	35.14
KRH29288	Soybean	cytosol	44.83	35.14
KRH17206	Soybean	cytosol	44.83	35.14
KRH07669	Soybean	cytosol, nucleus, peroxisome	43.97	34.46
KRH00486	Soybean	cytosol	45.69	33.54
KRH55097	Soybean	endoplasmic reticulum	38.79	29.41
KRH26227	Soybean	cytosol	38.79	29.41
KRH21984	Soybean	endoplasmic reticulum, nucleus	38.79	29.41
KRH27335	Soybean	endoplasmic reticulum	31.03	23.84
KRH42820	Soybean	plastid	30.17	19.89
KRG89662	Soybean	endoplasmic reticulum	28.45	19.76

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EMBL:ACUP02003537	EnsemblPlantsGene:GLYMA_06G190900	GO:GO:0000166	GO:GO:0000209
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0016574	GO:GO:0016740	GO:GO:0019538	GO:GO:0031625	GO:GO:0043161
GO:GO:0061630	UniProt:I1KCQ0	InterPro:IPR000608	InterPro:IPR016135	EnsemblPlants:KRH54510	ProteinID:KRH54510
ProteinID:KRH54510.1	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF7
MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00023C3A79	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:16769653..16773092

Molecular Weight (calculated)

13299.6 Da

IEP (calculated)

4.442

GRAVY (calculated)

-0.437

Length

116 amino acids

Sequence
(BLAST)

001: MLLIFGPDDT PWDGGTFKLT LQFTEDYPNK PPTVRFVSRM FHPNIYADGS ICLDILQNQW SPIYDVAAIL TSIQSLLCDP NPNSPANSEA ARMFSENKRE
101: YNRRVREIVE QSWTAD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.