CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54510	Soybean	cytosol, nucleus, plastid	66.9	83.62
CDY39315	Canola	mitochondrion	74.48	71.05
CDY11654	Canola	mitochondrion	69.66	66.45
CDY38761	Canola	mitochondrion	69.66	66.45
Solyc03g113100.2.1	Tomato	mitochondrion, nucleus	68.97	65.79
CDY30726	Canola	mitochondrion, nucleus	66.21	64.0
CDY66232	Canola	mitochondrion, nucleus	66.21	64.0
CDY03040	Canola	mitochondrion, nucleus	61.38	63.12
CDX84034	Canola	nucleus	40.0	54.21
CDX96859	Canola	mitochondrion	64.14	49.21
Zm00001d007897_P002	Maize	mitochondrion	70.34	47.66
CDY37098	Canola	cytosol	28.28	36.94
CDX73346	Canola	cytosol	28.28	36.94
CDY23674	Canola	cytosol	28.28	36.94
CDX96210	Canola	cytosol	35.86	35.14
CDY47067	Canola	cytosol	35.86	35.14
CDY49174	Canola	cytosol	35.86	35.14
CDY35636	Canola	cytosol	35.86	35.14
CDY14388	Canola	cytosol	35.86	35.14
CDY51965	Canola	cytosol	35.17	34.46
CDX76970	Canola	cytosol	35.17	34.46
CDY17396	Canola	cytosol	35.17	34.46
CDY34409	Canola	cytosol	34.48	33.78
CDY25571	Canola	cytosol	34.48	33.78
CDY06521	Canola	cytosol, plastid	36.55	33.12
CDY68877	Canola	cytosol, mitochondrion	36.55	33.12
CDX71304	Canola	cytosol, mitochondrion, nucleus	33.79	33.11
CDY31408	Canola	cytosol	33.79	33.11
CDY02238	Canola	cytosol	33.1	32.43
CDX89747	Canola	cytosol	32.41	31.76
CDY08368	Canola	cytosol	32.41	29.56
CDY11958	Canola	cytosol	35.17	29.48
CDY26882	Canola	cytosol	28.97	28.97
CDY54342	Canola	cytosol	35.86	28.26
CDX88485	Canola	cytosol	29.66	28.1
CDX87428	Canola	cytosol	29.66	28.1
CDX96802	Canola	cytosol	29.66	28.1
CDY54372	Canola	cytosol	29.66	28.1
CDX83936	Canola	cytosol	29.66	28.1
CDY35126	Canola	cytosol	29.66	28.1
CDX81788	Canola	cytosol	29.66	28.1
CDY14587	Canola	cytosol	29.66	27.92
CDY40025	Canola	cytosol	28.97	27.45
CDY57941	Canola	cytosol	28.28	26.45
CDY38184	Canola	cytosol	32.41	26.11
CDX79272	Canola	cytosol	30.34	25.88
CDY65274	Canola	cytosol	24.83	24.66
CDY06520	Canola	cytosol	25.52	23.87
CDY36778	Canola	cytosol	34.48	23.04
CDY39254	Canola	cytosol	17.24	21.55
CDX73344	Canola	cytosol	23.45	20.73
CDY59253	Canola	mitochondrion	25.52	20.22
CDY23617	Canola	plastid	24.83	19.67

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	GO:A0A078JQ99	UniProt:A0A078JQ99	EnsemblPlants:CDY68969	ProteinID:CDY68969
ProteinID:CDY68969.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00081505001	InterPro:IPR000608	InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF5	MetaCyc:PWY-7511	SMART:SM00212	SUPFAM:SSF54495
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniPathway:UPA00143	UniParc:UPI0004EC0891	:

Description

BnaC05g49100DBnaC05g49100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQ99]

Coordinates

chrLK038372:+:2573..3590

Molecular Weight (calculated)

16648.0 Da

IEP (calculated)

9.060

GRAVY (calculated)

-0.334

Length

145 amino acids

Sequence
(BLAST)

001: MDGHYRSLIY MRPLAIRGMQ WALSLQKAIL DTPKINMMAR VLFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY DVAAILTSIQ
101: SLLCDPNPNS PANSEAARMY SENKREYNRK VRDVVEQSWT ATSSS

Best Arabidopsis Sequence Match ( AT1G14400.1 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.