Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03040 | Canola | mitochondrion, nucleus | 83.18 | 63.12 |
| AT1G14400.1 | Thale cress | mitochondrion, nucleus | 85.98 | 60.53 |
| CDY39315 | Canola | mitochondrion | 85.05 | 59.87 |
| AT2G02760.2 | Thale cress | mitochondrion, nucleus | 84.11 | 59.21 |
| TraesCS3B01G131500.2 | Wheat | nucleus | 83.18 | 58.55 |
| Solyc02g087750.2.1 | Tomato | mitochondrion, nucleus | 82.24 | 57.89 |
| CDY38761 | Canola | mitochondrion | 82.24 | 57.89 |
| CDY11654 | Canola | mitochondrion | 82.24 | 57.89 |
| Solyc02g067420.2.1 | Tomato | nucleus | 79.44 | 55.92 |
| TraesCS3D01G114600.3 | Wheat | mitochondrion | 83.18 | 54.94 |
| TraesCS3A01G112600.1 | Wheat | mitochondrion | 83.18 | 54.94 |
| PGSC0003DMT400017857 | Potato | mitochondrion, nucleus | 77.57 | 54.61 |
| CDY30726 | Canola | mitochondrion, nucleus | 75.7 | 54.0 |
| CDY66232 | Canola | mitochondrion, nucleus | 75.7 | 54.0 |
| CDX96859 | Canola | mitochondrion | 86.92 | 49.21 |
| PGSC0003DMT400003320 | Potato | cytoskeleton, cytosol, nucleus | 82.24 | 44.0 |
| KRG99148 | Soybean | mitochondrion | 52.34 | 42.75 |
| CDY68969 | Canola | mitochondrion | 54.21 | 40.0 |
| HORVU3Hr1G020470.1 | Barley | plastid | 83.18 | 39.21 |
| CDY14388 | Canola | cytosol | 37.38 | 27.03 |
| CDY35636 | Canola | cytosol | 37.38 | 27.03 |
| CDY47067 | Canola | cytosol | 37.38 | 27.03 |
| CDY34409 | Canola | cytosol | 37.38 | 27.03 |
| CDY49174 | Canola | cytosol | 37.38 | 27.03 |
| CDY25571 | Canola | cytosol | 37.38 | 27.03 |
| CDX96210 | Canola | cytosol | 37.38 | 27.03 |
| CDX89747 | Canola | cytosol | 36.45 | 26.35 |
| CDY17396 | Canola | cytosol | 35.51 | 25.68 |
| CDY51965 | Canola | cytosol | 35.51 | 25.68 |
| CDX76970 | Canola | cytosol | 35.51 | 25.68 |
| CDY02238 | Canola | cytosol | 35.51 | 25.68 |
| CDY68877 | Canola | cytosol, mitochondrion | 36.45 | 24.38 |
| CDY06521 | Canola | cytosol, plastid | 36.45 | 24.38 |
| CDX71304 | Canola | cytosol, mitochondrion, nucleus | 33.64 | 24.32 |
| CDY31408 | Canola | cytosol | 33.64 | 24.32 |
| CDY08368 | Canola | cytosol | 33.64 | 22.64 |
| CDY23674 | Canola | cytosol | 23.36 | 22.52 |
| CDX83936 | Canola | cytosol | 31.78 | 22.22 |
| CDX81788 | Canola | cytosol | 31.78 | 22.22 |
| CDY35126 | Canola | cytosol | 31.78 | 22.22 |
| CDY54372 | Canola | cytosol | 31.78 | 22.22 |
| CDY11958 | Canola | cytosol | 35.51 | 21.97 |
| CDY54342 | Canola | cytosol | 37.38 | 21.74 |
| CDY37098 | Canola | cytosol | 22.43 | 21.62 |
| CDX73346 | Canola | cytosol | 22.43 | 21.62 |
| CDX96802 | Canola | cytosol | 30.84 | 21.57 |
| CDX88485 | Canola | cytosol | 30.84 | 21.57 |
| CDX87428 | Canola | cytosol | 30.84 | 21.57 |
| CDY40025 | Canola | cytosol | 30.84 | 21.57 |
| CDY39254 | Canola | cytosol | 23.36 | 21.55 |
| CDY14587 | Canola | cytosol | 30.84 | 21.43 |
| CDY57941 | Canola | cytosol | 30.84 | 21.29 |
| CDY26882 | Canola | cytosol | 27.1 | 20.0 |
| CDX79272 | Canola | cytosol | 31.78 | 20.0 |
| CDY38184 | Canola | cytosol | 33.64 | 20.0 |
| CDY36778 | Canola | cytosol | 36.45 | 17.97 |
| CDY65274 | Canola | cytosol | 23.36 | 17.12 |
| CDY59253 | Canola | mitochondrion | 28.97 | 16.94 |
| CDY06520 | Canola | cytosol | 24.3 | 16.77 |
| CDY23617 | Canola | plastid | 26.17 | 15.3 |
| CDX73344 | Canola | cytosol | 15.89 | 10.37 |
Protein Annotations
| EnsemblPlants:CDX84034 | EnsemblPlantsGene:GSBRNA2T00139855001 | Gene3D:3.10.110.10 | InterPro:IPR000608 | InterPro:IPR016135 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_enzyme/RWD | PANTHER:PTHR43898 | PANTHER:PTHR43898:SF5 | PFAM:PF00179 | PFscan:PS50127 | ProteinID:CDX84034 |
| ProteinID:CDX84034.1 | SMART:SM00212 | SUPFAM:SSF54495 | UniParc:UPI0004EEE372 | MapMan:35.1 | : |
Description
BnaC08g16110D
Coordinates
chrLK031834:+:1867000..1867774
Molecular Weight (calculated)
12225.2 Da
IEP (calculated)
4.329
GRAVY (calculated)
-0.716
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPARKRLMR DFESLRQDPP AGISGAPQDS NIMLWNAVIF GPDDSPWDGV YADGRVCLDI LQNQWTPSLL CDPNTNSYAN SEAALMYSEN KREYNRRVRD
101: VVEQSWD
101: VVEQSWD
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD
Arabidopsis Description
UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.