Factsheet for TraesCS3A01G112600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G369300.2
TraesCS3A01G467300.1
TraesCS3A01G469800.2
TraesCS3B01G401200.2
TraesCS3B01G511800.1
TraesCS3D01G362300.2
TraesCS3D01G462600.5
TraesCS3D01G465000.1
TraesCS3D01G465100.1
TraesCS3D01G466100.1
TraesCS6A01G251200.2
TraesCS6B01G274100.2
TraesCS6D01G233000.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14400.1	TraesCS3A01G467300.1	AT1G55250.1	18849490
AT1G14400.1	TraesCS3A01G469800.2	AT1G55250.1	18849490
AT1G14400.1	TraesCS3B01G511800.1	AT1G55250.1	18849490
AT1G14400.1	TraesCS3D01G462600.5	AT1G55250.1	18849490
AT1G14400.1	TraesCS3D01G465000.1	AT1G55250.1	18849490
AT1G14400.1	TraesCS3D01G465100.1	AT1G55250.1	18849490
AT1G14400.1	TraesCS3D01G466100.1	AT1G55250.1	18849490
AT1G14400.1	TraesCS3A01G369300.2	AT2G44950.1	18849490
AT1G14400.1	TraesCS3B01G401200.2	AT2G44950.1	18849490
AT1G14400.1	TraesCS3D01G362300.2	AT2G44950.1	18849490
AT1G14400.1	TraesCS6A01G251200.2	AT2G44950.1	18849490
AT1G14400.1	TraesCS6B01G274100.2	AT2G44950.1	18849490
AT1G14400.1	TraesCS6D01G233000.5	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G131500.2	Wheat	nucleus	93.83	100.0
TraesCS3D01G114600.3	Wheat	mitochondrion	100.0	100.0
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	89.51	95.39
TraesCS2A01G247700.1	Wheat	nucleus	89.51	95.39
TraesCS5A01G429000.1	Wheat	mitochondrion, nucleus	87.65	93.42
Bra026582.1-P	Field mustard	mitochondrion, nucleus	87.65	93.42
Bra024808.1-P	Field mustard	mitochondrion, nucleus	87.65	93.42
Bra017410.1-P	Field mustard	mitochondrion, nucleus	87.65	93.42
AT2G02760.2	Thale cress	mitochondrion, nucleus	87.65	93.42
Bra026222.1-P	Field mustard	mitochondrion, nucleus	87.04	92.76
Bra026833.1-P	Field mustard	mitochondrion, nucleus	86.42	92.11
AT1G14400.1	Thale cress	mitochondrion, nucleus	86.42	92.11
CDY39315	Canola	mitochondrion	85.8	91.45
Solyc02g067420.2.1	Tomato	nucleus	84.57	90.13
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	83.33	88.82
Bra016704.1-P	Field mustard	nucleus	79.01	84.21
CDX84034	Canola	nucleus	54.94	83.18
KRG99148	Soybean	mitochondrion	64.81	80.15
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	89.51	72.5
HORVU3Hr1G020470.1	Barley	plastid	95.68	68.28
CDX96859	Canola	mitochondrion	79.63	68.25
Bra016703.1-P	Field mustard	nucleus	87.04	67.14
TraesCS3A01G487000.1	Wheat	cytosol	30.25	46.67
TraesCS3A01G238400.1	Wheat	cytosol	40.12	44.22
TraesCS7A01G343800.1	Wheat	cytosol, nucleus, peroxisome	40.12	43.92
TraesCS3A01G342500.1	Wheat	cytosol, nucleus, peroxisome	39.51	43.24
TraesCS2A01G539800.1	Wheat	cytosol	39.51	43.24
TraesCS1A01G301600.1	Wheat	cytosol, nucleus, peroxisome	39.51	43.24
TraesCS6A01G071100.1	Wheat	cytosol	38.27	41.61
TraesCS4A01G244100.1	Wheat	peroxisome	32.1	40.0
TraesCS4A01G246700.1	Wheat	peroxisome	31.48	39.23
TraesCS5A01G181700.1	Wheat	cytosol	37.04	39.22
TraesCS5A01G177100.1	Wheat	cytosol	35.8	39.19
TraesCS3A01G271800.1	Wheat	cytosol	36.42	38.56
TraesCS1A01G392400.1	Wheat	cytosol	35.8	37.91
TraesCS2A01G187000.1	Wheat	plastid	27.16	23.16

Protein Annotations

EnsemblPlants:TraesCS3A01G112600.1	EnsemblPlantsGene:TraesCS3A01G112600	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR43898	PANTHER:PTHR43898:SF8	PFAM:PF00179	PFscan:PS50127
ScanProsite:PS00183	SMART:SM00212	SUPFAM:SSF54495	TIGR:cd00195	MapMan:19.2.2.1.4	:

Description

No Description!

Coordinates

chr3A:+:80088571..80093357

Molecular Weight (calculated)

18657.2 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.530

Length

162 amino acids

Sequence
(BLAST)

001: MFAKIWRISR MSTPSRKRLM RDFKRLMQDP PAGISGAPQD NNIMLWNAVI FGPDDSPWDG GTFKLTLQFN EEYPNKPPTV RFISRMFHPN IYADGSICLD
101: ILQNQWSPIY DVAAILTSIQ SLLCDPNPNS PANSEAARMF SENKREYNRK VREIVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.