Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G466100.1 | Wheat | nucleus | 97.63 | 97.63 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 97.27 | 97.27 |
| TraesCS3D01G465000.1 | Wheat | nucleus | 18.84 | 96.36 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 52.61 | 94.67 |
| HORVU3Hr1G099950.5 | Barley | cytosol | 58.77 | 85.52 |
| Os10t0565600-01 | Rice | nucleus | 80.45 | 80.45 |
| Zm00001d029490_P004 | Maize | nucleus | 74.64 | 70.39 |
| OQU92405 | Sorghum | cytosol, mitochondrion | 77.13 | 67.53 |
| Solyc01g006030.2.1 | Tomato | nucleus | 25.47 | 63.42 |
| GSMUA_Achr6P06310_001 | Banana | nucleus | 64.69 | 62.69 |
| VIT_06s0004g00950.t01 | Wine grape | nucleus | 59.95 | 57.57 |
| KRH14812 | Soybean | nucleus | 52.96 | 50.74 |
| KRH73326 | Soybean | nucleus | 52.61 | 50.4 |
| CDY10575 | Canola | nucleus | 51.42 | 49.09 |
| CDY02453 | Canola | nucleus | 51.3 | 49.09 |
| Bra030874.1-P | Field mustard | nucleus | 51.3 | 49.09 |
| AT1G55250.1 | Thale cress | nucleus | 50.24 | 47.11 |
| Solyc01g006040.2.1 | Tomato | nucleus | 29.15 | 44.32 |
| CDY65754 | Canola | cytosol | 7.46 | 36.42 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 31.4 | 30.46 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 30.81 | 29.68 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS3D01G462600 | EnsemblPlants:TraesCS3D01G462600.5 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd16499 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:567066864..567076102
Molecular Weight (calculated)
96638.1 Da
IEP (calculated)
4.731
GRAVY (calculated)
-0.704
Length
844 amino acids
Sequence
(BLAST)
(BLAST)
001: MDATALHYEN QKLVQQLEAQ KSEMHLLEAK FKELRNEQSS YDNTLISLDK MWNQLVDDLI LLGVRFGGGL NNLPALDHEE LSEESIESCP SEEIFLFMLL
101: KSNNYGKKDD NSLLEFAEEA LALRRSATLA LMRSLQEAIA AQQARSEYLS LALNGEKSNE DVVVALQNHN DHLKEVVGNV REAISIVKEK HKRYLDEIEA
201: FKSSYSKELH EIKHLSGELE ETMAELEESR RKLVILQLQR HGGSLMNMSG PNAVNGAVSA DKSSDRNMGW GDLKDAVEEA KTLAGDRLFE LHETQEDNLI
301: LSKQLEDLQG QLKDDNYIFT SKPYTILSDQ LHHLNAEIER YKGLVEVLQN DKNQFLQREK EMCAKGESVD NIKQSITAYE AKIEELEHQI LKSMAEKNDL
401: EIKVEESLQD SGKKDFKDEI HVMAAALSKE MEMMENQLNR SKDAASEALA LREEAESLRT LLAKKISEQK EISDRYNTQV SEIKSLKELI ETLEKENQEL
501: EFIVDMYGKE CSESRTITEI KESENRARKQ AEYLRTSLEE HSLELRVKAA NEAETACQRR LCIAEAELEE LRTDVDASER DVLELKEAIR IKEAEGDAYI
601: SEIETIGQAY EDMQTQNQHL LQQVADRDDF NIKLVSDSVK TKQASASLLS EKHLLQKQLH QVNSSLESSK QKLCRGEEQM KAYVAQAIKA SSENRHHAIT
701: IEKTLLEVSE AEKELKWLRS AVGSSEKEYE QNQKKIAELR TELERERSEK RKLEEEYEEV KNEVTELTSE NEEATIQKLQ DEIKECKAIL KCGVCFDRPK
801: EVVITKCFHL FCSTCIQRNL ELRHRKCPGC GTPFGQNDVR EVKI
101: KSNNYGKKDD NSLLEFAEEA LALRRSATLA LMRSLQEAIA AQQARSEYLS LALNGEKSNE DVVVALQNHN DHLKEVVGNV REAISIVKEK HKRYLDEIEA
201: FKSSYSKELH EIKHLSGELE ETMAELEESR RKLVILQLQR HGGSLMNMSG PNAVNGAVSA DKSSDRNMGW GDLKDAVEEA KTLAGDRLFE LHETQEDNLI
301: LSKQLEDLQG QLKDDNYIFT SKPYTILSDQ LHHLNAEIER YKGLVEVLQN DKNQFLQREK EMCAKGESVD NIKQSITAYE AKIEELEHQI LKSMAEKNDL
401: EIKVEESLQD SGKKDFKDEI HVMAAALSKE MEMMENQLNR SKDAASEALA LREEAESLRT LLAKKISEQK EISDRYNTQV SEIKSLKELI ETLEKENQEL
501: EFIVDMYGKE CSESRTITEI KESENRARKQ AEYLRTSLEE HSLELRVKAA NEAETACQRR LCIAEAELEE LRTDVDASER DVLELKEAIR IKEAEGDAYI
601: SEIETIGQAY EDMQTQNQHL LQQVADRDDF NIKLVSDSVK TKQASASLLS EKHLLQKQLH QVNSSLESSK QKLCRGEEQM KAYVAQAIKA SSENRHHAIT
701: IEKTLLEVSE AEKELKWLRS AVGSSEKEYE QNQKKIAELR TELERERSEK RKLEEEYEEV KNEVTELTSE NEEATIQKLQ DEIKECKAIL KCGVCFDRPK
801: EVVITKCFHL FCSTCIQRNL ELRHRKCPGC GTPFGQNDVR EVKI
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.