Factsheet for Zm00001d029490_P004

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014640_P035
Zm00001d029490_P004
Zm00001d036507_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	Zm00001d029490_P004	AT1G55250.1	18849490
AT1G55250.1	Zm00001d014640_P035	AT2G44950.1	18849490
AT1G55250.1	Zm00001d036507_P003	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU92405	Sorghum	cytosol, mitochondrion	86.93	80.71
TraesCS3D01G465000.1	Wheat	nucleus	14.41	78.18
TraesCS3A01G467300.1	Wheat	nucleus	70.61	74.88
TraesCS3D01G462600.5	Wheat	nucleus	70.39	74.64
TraesCS3D01G466100.1	Wheat	nucleus	70.39	74.64
Os10t0565600-01	Rice	nucleus	70.28	74.53
TraesCS3B01G511800.1	Wheat	nucleus	69.83	74.05
TraesCS3A01G469800.2	Wheat	cytosol	37.43	73.46
TraesCS3D01G465100.1	Wheat	cytosol	37.65	71.86
HORVU3Hr1G099950.5	Barley	cytosol	40.67	62.76
Solyc01g006030.2.1	Tomato	nucleus	23.13	61.06
GSMUA_Achr6P06310_001	Banana	nucleus	56.42	57.98
VIT_06s0004g00950.t01	Wine grape	nucleus	54.41	55.4
KRH73326	Soybean	nucleus	47.15	47.9
KRH14812	Soybean	nucleus	47.15	47.9
CDY10575	Canola	nucleus	46.37	46.95
Bra030874.1-P	Field mustard	nucleus	46.15	46.83
CDY02453	Canola	nucleus	46.15	46.83
AT1G55250.1	Thale cress	nucleus	45.25	45.0
Solyc01g006040.2.1	Tomato	nucleus	26.15	42.16
CDY65754	Canola	cytosol	7.49	38.73
Zm00001d014640_P035	Maize	cytosol	28.16	29.3
Zm00001d036507_P003	Maize	cytosol	26.59	27.32

Protein Annotations

EntrezGene:100274688	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	UniProt:A0A1D6K5I6	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006950
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009791	GO:GO:0009965
GO:GO:0009987	GO:GO:0010162	GO:GO:0010228	GO:GO:0010390	GO:GO:0016043	GO:GO:0016740
GO:GO:0016874	GO:GO:0019538	GO:GO:0033523	GO:GO:0042803	GO:GO:0045087	InterPro:IPR001841
InterPro:IPR013083	ProteinID:ONL98848.1	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163
PANTHER:PTHR23163:SF0	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0008442AE0	EnsemblPlantsGene:Zm00001d029490	EnsemblPlants:Zm00001d029490_P004
EnsemblPlants:Zm00001d029490_T004	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

E3 ubiquitin-protein ligase BRE1-like 2

Coordinates

chr1:-:72889642..72909600

Molecular Weight (calculated)

101624.0 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.591

Length

895 amino acids

Sequence
(BLAST)

001: MSSDRVNAYG GSRRDVLANF GMASVQMDST ALQYENQKLV QQLEVQKSEM HALERKFKEL SDDQCSYDKT LISLNKLWNQ LIDDLVLLGV RAGGDLDNLQ
101: ALDHEELSEE SLESCPSEEI FLLRLLKTNN IRDNSDTSLL KFVEEALAFR SSATVTLMKS LQETISSQQA RSESLSLALN GQKSNEDVIV ALRNHNDCLK
201: EVAENASQAI SIINEKHKRY LDEIEAFKSN HSRELQEIKR ISGELEESIA ELEESQRKLV VLQLQRHGSV MDASGANAVN GGISTHKSSD KSMSWQDLKD
301: AVDAAKTLAG NRLLELHQTQ EDNLILSKEL GDLEGQLKDE KYVLVSKPYM ILNDKLQHLN AEIERYRGLV EVLQNDKDQL MQREKEISAK AESLDSVKQT
401: IITYEKKIEE LETQIQILFS EKNDLETKVE ETLQDSGKKD FKNEIHVMAA ALSNELGMME NQLSRSKDAA SEALALREQA ESLRSLVAKK IEEHKKISDK
501: YNSQVIEIKS LKALLRFHLP PRQLCASAFV ACGSRNSPVL FTTTSQTLGH RSLLSSSFGE QLKQVRTIAD IEESETRARN QAEYLRSNLE EHSLELRVKA
601: ANEAEAACQQ RLSFAEVELE ELRTKVDASE RDVVELKEAI RIKEAEGDAY ISDIETVGQA YEDMQTQNQH LLQQLTDRDD FNIKLVSDSV KMKQACSSLL
701: SDKLMLEKQL QQVNTSLESS KLKIARGEEQ MKTCVAQAIK TSAENRHLTI SLERIALELS NTDKELKWLR SSVGSSEKEY EQTQQKISEL RALLEHERSE
801: RRRLEEQYEE VKNEVMELTS ETEETTVRKL EDEIKECKGI LKCGVCFDRP KEVVITKCFH LFCSLCIQRN LEIRHRKCPG CGTPFGQNDV REVKI

Best Arabidopsis Sequence Match ( AT1G55250.1 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVS FFDCDFSLLC LRLVDYEIDV DATVLQLQNQ KLVQQLDLQK KQLYDVESKI QELQLNQTSY
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.