Factsheet for Solyc01g006030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006030.2.1
Solyc01g006040.2.1
Solyc02g067420.2.1
Solyc02g087750.2.1
Solyc11g013370.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	Solyc02g067420.2.1	AT1G14400.1	18849490
AT1G55250.1	Solyc02g087750.2.1	AT1G14400.1	18849490
AT1G55250.1	Solyc01g006030.2.1	AT1G55250.1	18849490
AT1G55250.1	Solyc01g006040.2.1	AT1G55250.1	18849490
AT1G55250.1	Solyc11g013370.1.1	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G465000.1	Wheat	nucleus	29.79	61.21
VIT_06s0004g00950.t01	Wine grape	nucleus	75.52	29.12
Os10t0565600-01	Rice	nucleus	64.6	25.95
GSMUA_Achr6P06310_001	Banana	nucleus	66.37	25.83
TraesCS3B01G511800.1	Wheat	nucleus	64.31	25.83
TraesCS3D01G466100.1	Wheat	nucleus	64.01	25.71
TraesCS3D01G462600.5	Wheat	nucleus	63.42	25.47
TraesCS3A01G467300.1	Wheat	nucleus	63.42	25.47
KRH73326	Soybean	nucleus	65.49	25.2
KRH14812	Soybean	nucleus	64.9	24.97
CDY10575	Canola	nucleus	63.72	24.43
CDY02453	Canola	nucleus	63.42	24.38
Bra030874.1-P	Field mustard	nucleus	63.13	24.26
AT1G55250.1	Thale cress	nucleus	62.24	23.44
Zm00001d029490_P004	Maize	nucleus	61.06	23.13
OQU92405	Sorghum	cytosol, mitochondrion	61.06	21.47
Solyc11g013370.1.1	Tomato	nucleus	42.77	17.12
CDY65754	Canola	cytosol	0.59	1.16
Solyc01g006040.2.1	Tomato	nucleus	1.18	0.72
HORVU3Hr1G099950.5	Barley	cytosol	0.88	0.52
TraesCS3A01G469800.2	Wheat	cytosol	0.0	0.0
TraesCS3D01G465100.1	Wheat	cytosol	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010390
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4ASG9
PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF3	SMART:SM00184
SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g006030.2	EnsemblPlants:Solyc01g006030.2.1	UniParc:UPI0002761EC2	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:713315..717230

Molecular Weight (calculated)

38781.7 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.726

Length

339 amino acids

Sequence
(BLAST)

001: MLGQQIYDNR DISEIRESER RAHSQAEILR AALNEHDLEL RVKAANEAES ACQQRLSAAE AEIAELRAEL DASDRGVLEL TEAIKIKEGE AETYISEIET
101: IGQAYEDMQT QNQHLLQQMA ERDDYNIKLV SESVKIKQEQ SSLLSRKQVS TAQLQQSKTS LESLKMRITQ SEDQMKVHIT EALSYTQEDR HLALLLETTK
201: RESGDAEKEL KWLRSAALSA EKEYEQLHRK LDEFQKERET ERSEKKKLDE DLVELSNTVD ELTSASGEAA VQRLQDEIND SKAILKCGVC LDRPKEVVIT
301: KCYHLFCNPC IQRNLEIRHR KCPACGTAFG QSDIRFVKI

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.