Factsheet for Os10t0565600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0550400-01
Os10t0565600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	Os10t0565600-01	AT1G55250.1	18849490
AT1G55250.1	Os04t0550400-01	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G465000.1	Wheat	nucleus	16.35	83.64
TraesCS3D01G462600.5	Wheat	nucleus	80.45	80.45
TraesCS3A01G467300.1	Wheat	nucleus	79.74	79.74
TraesCS3B01G511800.1	Wheat	nucleus	79.27	79.27
TraesCS3D01G466100.1	Wheat	nucleus	79.15	79.15
TraesCS3A01G469800.2	Wheat	cytosol	40.4	74.78
TraesCS3D01G465100.1	Wheat	cytosol	40.88	73.56
Zm00001d029490_P004	Maize	nucleus	74.53	70.28
HORVU3Hr1G099950.5	Barley	cytosol	46.92	68.28
OQU92405	Sorghum	cytosol, mitochondrion	76.07	66.6
Solyc01g006030.2.1	Tomato	nucleus	25.95	64.6
GSMUA_Achr6P06310_001	Banana	nucleus	63.51	61.54
VIT_06s0004g00950.t01	Wine grape	nucleus	58.53	56.2
KRH14812	Soybean	nucleus	51.9	49.72
KRH73326	Soybean	nucleus	51.54	49.38
CDY10575	Canola	nucleus	51.07	48.76
CDY02453	Canola	nucleus	50.83	48.64
Bra030874.1-P	Field mustard	nucleus	50.71	48.53
AT1G55250.1	Thale cress	nucleus	49.41	46.33
Solyc01g006040.2.1	Tomato	nucleus	28.08	42.7
CDY65754	Canola	cytosol	7.7	37.57
Os04t0550400-01	Rice	nucleus	31.16	29.75

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:4349420	ProteinID:AAL79702.1	ProteinID:ABB47997.1	ProteinID:ABB47998.1
EMBL:AK103864	ProteinID:BAF27258.1	ProteinID:BAT12107.1	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	ProteinID:EEE51418.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325	GO:GO:0006464
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009791
GO:GO:0009965	GO:GO:0009987	GO:GO:0010162	GO:GO:0010228	GO:GO:0010390	GO:GO:0016043
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0033523	GO:GO:0042803	GO:GO:0045087
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os10g0565600	EnsemblPlants:Os10t0565600-01	PFAM:PF13920
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF0	UniProt:Q336R3	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00005E1FAE	RefSeq:XP_015614586.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS
SEG:seg	:	:	:	:	:

Description

HISTONE MONOUBIQUITINATION2, HISTONE MONOUBIQUITINATION 2E3 ligases of H2Bub1, Transcriptional regulation of anther development (Os10t0565600-01)

Coordinates

chr10:+:22388699..22395755

Molecular Weight (calculated)

96503.1 Da

IEP (calculated)

4.606

GRAVY (calculated)

-0.685

Length

844 amino acids

Sequence
(BLAST)

001: MDAAALQYEN QKLVQQLEAQ KSKMRALEGK FKELRDEQCS YDNTLICLNK MWNQLIDDLV LLGVRAGGDL NGLQALDHEE MSEESLESCP SEEIFLFRLL
101: NSRNFRNNDD SSLSKLVEEA LALRYSTTVT LMKSLQEAFA VQQARSESLS LALNGQNSSE DVIVALENHN DYLKEVVDNL RQAVSIINRK HEKYLDEIEA
201: FKNNQSRELH EVKCLSGELE ESMAELEESR RKLAVLQLQT GGGSLMNTSA PNGVNGSVST DKSSDKGMGW RDLKDAVEEA KTLAANRLFE LHETQEDNLI
301: LSKQLEDIQD QLKDENYIVT SKPYTILSDQ LHHLNAEIER YRGLVEVLQN EKDQLMQKEE EMLAKAESVD AVQQSITTYK AKIEDLEHEI QKLMAEKNDL
401: EIKAEEALQD SGKKDFKDEI HVMAASLSKE MELLDNQMNR SKDAASEALA LREEADYLRT LLAKKIDEQK EISDRYNTQV TEIKSLKALI ETLDQEKQEL
501: QFIVDMLGKE CSESRAISEI EESENRARKQ AEYLRKCLEE HNLELRVKAA NEAETACQQR LSIAEAELED LRAKVDASER DVMKLKESIR IKEAEVDGHI
601: SEIETIGQAY EDMQTQNQHL LQQVADRDDF NIKLVSDSVK MKQAYGSLLA EKNMLQKQLQ HVNSSLESSK LKITSGEEQM KTYVAQAMKS SSENRHLAIS
701: LERTMLEVSD AEKELKWLRS ATGSAEKEYE INQKKIAELK MELERERNER IKLEEEYEEV KNEVSELTSE TEETTIQKLQ DEIKECKAIL KCGVCFDRPK
801: EVVITKCFHL FCSPCIQRNL EIRHRKCPGC GTPFGQSDVR EVKI

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.