Factsheet for VIT_06s0004g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g00950.t01
VIT_15s0021g02140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	VIT_06s0004g00950.t01	AT1G55250.1	18849490
AT1G55250.1	VIT_15s0021g02140.t01	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006030.2.1	Tomato	nucleus	29.12	75.52
KRH14812	Soybean	nucleus	66.44	66.29
TraesCS3D01G465000.1	Wheat	nucleus	12.4	66.06
KRH73326	Soybean	nucleus	65.98	65.83
CDY10575	Canola	nucleus	63.59	63.24
CDY02453	Canola	nucleus	63.37	63.15
Bra030874.1-P	Field mustard	nucleus	63.14	62.93
GSMUA_Achr6P06310_001	Banana	nucleus	61.89	62.46
AT1G55250.1	Thale cress	nucleus	62.8	61.33
Solyc01g006040.2.1	Tomato	nucleus	38.57	61.08
TraesCS3D01G462600.5	Wheat	nucleus	57.57	59.95
TraesCS3D01G466100.1	Wheat	nucleus	57.22	59.6
TraesCS3A01G467300.1	Wheat	nucleus	57.11	59.48
TraesCS3B01G511800.1	Wheat	nucleus	57.0	59.36
Os10t0565600-01	Rice	nucleus	56.2	58.53
CDY65754	Canola	cytosol	10.81	54.91
Zm00001d029490_P004	Maize	nucleus	55.4	54.41
TraesCS3A01G469800.2	Wheat	cytosol	27.53	53.07
TraesCS3D01G465100.1	Wheat	cytosol	27.99	52.45
OQU92405	Sorghum	cytosol, mitochondrion	56.43	51.45
HORVU3Hr1G099950.5	Barley	cytosol	31.85	48.28
VIT_15s0021g02140.t01	Wine grape	nucleus	37.54	37.59

Protein Annotations

EntrezGene:100251829	wikigene:100251829	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	ProteinID:CBI16487	ProteinID:CBI16487.3
ncoils:Coil	UniProt:D7SLF9	InterPro:E3_ubiquit_lig_Bre1	EMBL:FN594951	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009653	GO:GO:0009791	GO:GO:0009965	GO:GO:0009987	GO:GO:0010162
GO:GO:0010228	GO:GO:0010390	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0033523
GO:GO:0042803	GO:GO:0045087	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100251829	wikigene:LOC100251829
PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF3	SMART:SM00184
SUPFAM:SSF57850	TIGR:TC54715	UniParc:UPI0001BE0D3A	ArrayExpress:VIT_06s0004g00950	EnsemblPlantsGene:VIT_06s0004g00950	EnsemblPlants:VIT_06s0004g00950.t01
unigene:Vvi.9999	RefSeq:XP_002283417	RefSeq:XP_002283417.2	RefSeq:XP_010651347.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:1036495..1052358

Molecular Weight (calculated)

100479.0 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.669

Length

879 amino acids

Sequence
(BLAST)

001: MENADSSEEP EKKRPHLNTL SSPMARNSSV SPDNRSVDAT YLQYQNQKLV QQLEVQKHEL HDLEDKIKEL KDRQTSYDDM LITMNQLWSQ LVDDLILLGV
101: RAGGGQNAIQ TLDHADHSRG LIPSCPAEEI FLCRLLETDS VESNGNDGIV KYVEEALALR HSSTLELIKS LEDTIDAQRV KTENIAQALH GKLSAEDAII
201: QLSKIDDLMK EEANNLREVI DALHLKHKEY VDGIQTYVHS HSVDQSEIKR LAGELEESMA ELEESRRKLV NLKMQKDVAS VVHTPVQGAV NGSLSPEKHA
301: DRTMGFRELK DSVEETKILA ADRLSELHEA QEDNLILSKQ LQDLQNELKD DKYVYSSRPY TLLNDQLQHW NAEAERYKLL TDSLQADRAQ VVRREKELNA
401: KSELADAARS VIENDSKIEE LELQLQKCLI EKNDLEVKMK EALQDSGRKD IKAEFHVMAS ALSKEMGMME SQLNRWKETA HEALSLREQV QSLKALLNKK
501: TNEQKCLADK CEEQMVEIKS LKALIEKLQK GKLELQIFVD MHGQESYDNR DLMEIKESEH KAHMQAEVLR NALDEHSLEL RVKAANEAEA ACQQRLSAAE
601: AEIADLRAKL DASERDVLEL KEAIRIKDVE AEAYISEIET IGQAYEDMQT QNQHLLQQVT ERDDYNIKLV SESVKTKQMQ SFLLSEKQAL AKQLQQVNNA
701: LESLKMRIAQ SEEQMKVCLA EALKYTQEDR HLAVSLETAK WELADAEKEL KWLKSALASS EKEYEQIQRK KEEVQMELDN ERSERLKLEE ELKELNREIA
801: EMSSESGEAA IQKLQDEIKD GKAILKCGVC FDRPKEVVIV KCYHLFCNPC IQRNLEIRHR KCPACGTAFG QNDVRFVKI

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.