Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g006030.2.1 | Tomato | nucleus | 61.21 | 29.79 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 96.97 | 18.96 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 96.36 | 18.84 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 96.36 | 18.84 |
| Os10t0565600-01 | Rice | nucleus | 83.64 | 16.35 |
| GSMUA_Achr6P06310_001 | Banana | nucleus | 76.97 | 14.58 |
| Zm00001d029490_P004 | Maize | nucleus | 78.18 | 14.41 |
| OQU92405 | Sorghum | cytosol, mitochondrion | 79.39 | 13.59 |
| VIT_06s0004g00950.t01 | Wine grape | nucleus | 66.06 | 12.4 |
| KRH14812 | Soybean | nucleus | 60.61 | 11.35 |
| CDY02453 | Canola | nucleus | 59.39 | 11.11 |
| CDY10575 | Canola | nucleus | 59.39 | 11.09 |
| KRH73326 | Soybean | nucleus | 58.79 | 11.01 |
| Bra030874.1-P | Field mustard | nucleus | 58.79 | 11.0 |
| AT1G55250.1 | Thale cress | nucleus | 59.39 | 10.89 |
| TraesCS3D01G362300.2 | Wheat | nucleus | 34.55 | 6.55 |
| TraesCS6D01G233000.5 | Wheat | nucleus | 33.94 | 6.39 |
| CDY65754 | Canola | cytosol | 1.82 | 1.73 |
| Solyc01g006040.2.1 | Tomato | nucleus | 0.61 | 0.18 |
| HORVU3Hr1G099950.5 | Barley | cytosol | 0.0 | 0.0 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 |
| ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF0 | SMART:SM00184 | SUPFAM:SSF57850 |
| EnsemblPlantsGene:TraesCS3D01G465000 | EnsemblPlants:TraesCS3D01G465000.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | TIGR:cd16499 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:568836712..568837491
Molecular Weight (calculated)
19189.0 Da
IEP (calculated)
7.314
GRAVY (calculated)
-0.785
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MKAYVAQAIK TSSENRHHAV TIEKTLLEVS EAEKELKWLR SAVGSSEKEY EQNQKKIAEL RTELERERSE KRKLEEEYEE VKNEVMKLTS ENEEATIQKL
101: QDEIKDCKAI LKCGVCFDRP KEVVIAKCFH LFCSTCIQRN LELRHRKCPG CGTPFGQNDV REVKI
101: QDEIKDCKAI LKCGVCFDRP KEVVIAKCFH LFCSTCIQRN LELRHRKCPG CGTPFGQNDV REVKI
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVS FFDCDFSLLC LRLVDYEIDV DATVLQLQNQ KLVQQLDLQK KQLYDVESKI QELQLNQTSY
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.