CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892
OQU92405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	OQU92405	AT1G55250.1	18849490
AT1G55250.1	EER88892	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029490_P004	Maize	nucleus	80.71	86.93
TraesCS3D01G465000.1	Wheat	nucleus	13.59	79.39
TraesCS3A01G467300.1	Wheat	nucleus	67.84	77.49
TraesCS3D01G466100.1	Wheat	nucleus	67.63	77.25
TraesCS3D01G462600.5	Wheat	nucleus	67.53	77.13
TraesCS3B01G511800.1	Wheat	nucleus	67.01	76.54
Os10t0565600-01	Rice	nucleus	66.6	76.07
TraesCS3A01G469800.2	Wheat	cytosol	35.17	74.34
TraesCS3D01G465100.1	Wheat	cytosol	35.58	73.13
HORVU3Hr1G099950.5	Barley	cytosol	40.35	67.07
Solyc01g006030.2.1	Tomato	nucleus	21.47	61.06
GSMUA_Achr6P06310_001	Banana	nucleus	54.56	60.39
VIT_06s0004g00950.t01	Wine grape	nucleus	51.45	56.43
KRH73326	Soybean	nucleus	44.61	48.81
KRH14812	Soybean	nucleus	44.5	48.69
CDY10575	Canola	nucleus	44.09	48.08
CDY02453	Canola	nucleus	43.88	47.96
Bra030874.1-P	Field mustard	nucleus	43.88	47.96
AT1G55250.1	Thale cress	nucleus	43.26	46.33
Solyc01g006040.2.1	Tomato	nucleus	24.79	43.06
CDY65754	Canola	cytosol	7.26	40.46
EER88892	Sorghum	cytosol	26.14	29.61

Protein Annotations

MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	UniProt:A0A1Z5S9J7	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009791	GO:GO:0009965	GO:GO:0009987
GO:GO:0010162	GO:GO:0010228	GO:GO:0010390	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0033523	GO:GO:0042803	GO:GO:0045087	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:OQU92405
ProteinID:OQU92405	ProteinID:OQU92405.1	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163
SMART:SM00184	EnsemblPlantsGene:SORBI_3001G340000	SUPFAM:SSF57850	UniParc:UPI000B8B9F57	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:62754370..62770069

Molecular Weight (calculated)

109440.0 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.610

Length

964 amino acids

Sequence
(BLAST)

001: MSNYNLKLCY TDTCRKPRIA YPIRIHVQYT MDTYPRSIYF LHPKFPITHA HVPLSRCPTC NSRTAAPRAA SLRGDGASPA RCSPATGDEP PPPLAGDEPP
101: SLLASRQRGI SAPATWIQGT PMDSTALQYE NQKLVQQLEA QKSEMYALER KFKELRDEQC SYDKTLISLN KLWNQLIDDL VLLGVRAGGD LDNLQALDHE
201: ELSEESLESC PSEEIFLLRL LKSSNIRDNS DTSLLEFVEE ALAFRCSATI TLMKSLQETI SSQQAKSELL SLALNAQKSN EDVIVALQNH NDCLKEVAEN
301: ASQAISIINE KHKRYLDEIE AFKSNHSSEL QEIKRISGEL EESTAELEES RRKLVVLQLQ RHGSVMDASG ANAVNGGIST HKSSDKSMSW QDLKDAVDAA
401: KTLAGNRLLE LHQTQEDNLI LSKELGDLEG QLRDEKYVLV SKPYMILNDK LQHLNAEIDR YRGLVEVLQN DKDQLMQREK EICAKSESVD GIKQTITTYE
501: TKIEELETQI QILFSEKNDL ETKVEETLQD SGKKDFKDEI HVMAAALSNE LGMMENQLSR SKDAASEALA LREQAESLRS LVAKKIEEHK KISDKYNSQV
601: IEIKSLKALV EELEQEKQEL EFIADMYAKE SSLSRTLADI EESETRARNQ AEYLRSNLEE HSLELRVKAA NEAEAACQQR LSFAEVELEE LRTKVDASER
701: DVVELKEAIR IKEAEGDAYI SDIETIGQAY EDMQTQNQHL LQQLTDRDDF NIKLVSDSVK MKQACSSLLS DKLMLEKQLQ QVNTSLESSK LKIARGEEQM
801: NTCVAQAIKT SAENRHLTIS LERIAVEVSN TDKELKWLRS SVGSSEKEYE QTQQKISELR ALLEHERNER RRLEEQYEEV KNEVMELTSE TEEITIQKLQ
901: DEIKECKAIL KCGVCFDRPK EVVITKCFHL FCSPCIQRNL EIRHRKCPGC GTPFGQNDVR EVKI

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.