Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G465000.1 | Wheat | nucleus | 14.58 | 76.97 |
| Solyc01g006030.2.1 | Tomato | nucleus | 25.83 | 66.37 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 62.69 | 64.69 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 62.57 | 64.57 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 62.11 | 64.1 |
| TraesCS3A01G467300.1 | Wheat | nucleus | 61.88 | 63.86 |
| Os10t0565600-01 | Rice | nucleus | 61.54 | 63.51 |
| VIT_06s0004g00950.t01 | Wine grape | nucleus | 62.46 | 61.89 |
| Zm00001d029490_P004 | Maize | nucleus | 57.98 | 56.42 |
| TraesCS3A01G469800.2 | Wheat | cytosol | 29.39 | 56.14 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 30.2 | 56.08 |
| KRH14812 | Soybean | nucleus | 55.22 | 54.6 |
| OQU92405 | Sorghum | cytosol, mitochondrion | 60.39 | 54.56 |
| KRH73326 | Soybean | nucleus | 54.53 | 53.92 |
| CDY02453 | Canola | nucleus | 51.89 | 51.25 |
| Bra030874.1-P | Field mustard | nucleus | 51.89 | 51.25 |
| CDY10575 | Canola | nucleus | 52.01 | 51.24 |
| HORVU3Hr1G099950.5 | Barley | cytosol | 33.64 | 50.52 |
| AT1G55250.1 | Thale cress | nucleus | 51.78 | 50.11 |
| Solyc01g006040.2.1 | Tomato | nucleus | 29.97 | 47.03 |
| CDY65754 | Canola | cytosol | 8.27 | 41.62 |
| GSMUA_Achr4P26970_001 | Banana | nucleus | 18.03 | 41.1 |
| GSMUA_Achr1P01610_001 | Banana | nucleus | 35.13 | 34.73 |
| GSMUA_Achr4P26960_001 | Banana | nucleus | 17.11 | 29.45 |
Protein Annotations
| MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009965 | GO:GO:0009987 | GO:GO:0010162 |
| GO:GO:0010228 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0033523 |
| GO:GO:0042803 | GO:GO:0045087 | EnsemblPlantsGene:GSMUA_Achr6G06310_001 | EnsemblPlants:GSMUA_Achr6P06310_001 | EnsemblPlants:GSMUA_Achr6T06310_001 | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:M0T4M9 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR23163 |
| PANTHER:PTHR23163:SF3 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002961A10 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
E3 ubiquitin-protein ligase BRE1-like 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06310_001]
Coordinates
chr6:-:4258159..4268262
Molecular Weight (calculated)
99060.1 Da
IEP (calculated)
5.090
GRAVY (calculated)
-0.570
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDAPAGLG FGSGDEGSPA SAITRQQVDA AVLQYQNQRL VQQLEAQKAE MHTLEGKFKE LRERQSSYDK SLMTVNRMWN QLVDDLILLG IRAGGDLHYL
101: QSLDHEDHCK DALVSCPPEE TFLCRLIRAG SVVKISGSLS VNFVQEALAS RHAATIDLMK YVLETITSRR DKNECLSFAL HGKLAPEDAI VQIQKFDESL
201: REVINNMHQS ADILLEKHKQ FTEEINTYKE SLSTTQSEIK RLSGELEESM AELEESRRKL AILQMHKHGA STTHASIANA ANGSSSPDKS ADRTMGLKDL
301: KDSIEEAKTL AASRLLELQE AQEDFLILSK QLDDLQSQLK DENYVVTSKP YTLLNDQLQH LNAELVRYKG LIESLQVDRN NYLPKENELN LKADSADAIK
401: ISVSNYEAKI AELELQIQKF VVEKNDLESK LEEAEQDLGR KDIKDEINVM ASALTKEMEM MESQLNRSKL AASEALALRK EADSLRPLLN RRISEHKVLS
501: DKYAEEMVEI KSLKALVDKL EKEKQELQFI MDMHGQECLD TRTIVEIKES EHRAHIQADL LKATLADHSL ELRVKAANDA EATCQQRLST AEAGIPELRA
601: KLDASERDVL ELQEAIRIKD AEAEAYISEI ETIGQAYEDM QTQNQHLLQL VADRDAYNIK LVSDSVKMKQ THSSLLSEKQ AMSKQLQQVN SSLEFLKTKV
701: AHSEEQMKLH VTQAVKASME NRHININLEK TKLELVDAEK ELKWLRSTIN SFEKEYERNQ KKIAELKVEL ERERNEKKKL EEELAEVKNE VMEMSSESEE
801: VTIQKLQDEI KECKAILKCG VCFDRPKEVV ITKCFHLFCY PCIQRNLEIR HRRCPGCGTA FGQNDVREVK I
101: QSLDHEDHCK DALVSCPPEE TFLCRLIRAG SVVKISGSLS VNFVQEALAS RHAATIDLMK YVLETITSRR DKNECLSFAL HGKLAPEDAI VQIQKFDESL
201: REVINNMHQS ADILLEKHKQ FTEEINTYKE SLSTTQSEIK RLSGELEESM AELEESRRKL AILQMHKHGA STTHASIANA ANGSSSPDKS ADRTMGLKDL
301: KDSIEEAKTL AASRLLELQE AQEDFLILSK QLDDLQSQLK DENYVVTSKP YTLLNDQLQH LNAELVRYKG LIESLQVDRN NYLPKENELN LKADSADAIK
401: ISVSNYEAKI AELELQIQKF VVEKNDLESK LEEAEQDLGR KDIKDEINVM ASALTKEMEM MESQLNRSKL AASEALALRK EADSLRPLLN RRISEHKVLS
501: DKYAEEMVEI KSLKALVDKL EKEKQELQFI MDMHGQECLD TRTIVEIKES EHRAHIQADL LKATLADHSL ELRVKAANDA EATCQQRLST AEAGIPELRA
601: KLDASERDVL ELQEAIRIKD AEAEAYISEI ETIGQAYEDM QTQNQHLLQL VADRDAYNIK LVSDSVKMKQ THSSLLSEKQ AMSKQLQQVN SSLEFLKTKV
701: AHSEEQMKLH VTQAVKASME NRHININLEK TKLELVDAEK ELKWLRSTIN SFEKEYERNQ KKIAELKVEL ERERNEKKKL EEELAEVKNE VMEMSSESEE
801: VTIQKLQDEI KECKAILKCG VCFDRPKEVV ITKCFHLFCY PCIQRNLEIR HRRCPGCGTA FGQNDVREVK I
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.