Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU0Hr1G018210.6 | |
| HORVU3Hr1G020470.1 | |
| HORVU3Hr1G099950.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55250.1 | HORVU3Hr1G020470.1 | AT1G14400.1 | 18849490 |
| AT1G55250.1 | HORVU3Hr1G099950.5 | AT1G55250.1 | 18849490 |
| AT1G55250.1 | HORVU0Hr1G018210.6 | AT2G44950.1 | 18849490 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G469800.2 | Wheat | cytosol | 74.14 | 94.3 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 74.83 | 92.54 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 85.52 | 58.77 |
| TraesCS3A01G467300.1 | Wheat | nucleus | 84.83 | 58.29 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 84.66 | 58.18 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 84.48 | 58.06 |
| Os10t0565600-01 | Rice | nucleus | 68.28 | 46.92 |
| Solyc01g006040.2.1 | Tomato | nucleus | 41.9 | 43.78 |
| Zm00001d029490_P004 | Maize | nucleus | 62.76 | 40.67 |
| OQU92405 | Sorghum | cytosol, mitochondrion | 67.07 | 40.35 |
| CDY65754 | Canola | cytosol | 10.86 | 36.42 |
| GSMUA_Achr6P06310_001 | Banana | nucleus | 50.52 | 33.64 |
| VIT_06s0004g00950.t01 | Wine grape | nucleus | 48.28 | 31.85 |
| KRH14812 | Soybean | nucleus | 41.55 | 27.36 |
| KRH73326 | Soybean | nucleus | 41.38 | 27.24 |
| Bra030874.1-P | Field mustard | nucleus | 40.52 | 26.64 |
| CDY10575 | Canola | nucleus | 40.52 | 26.58 |
| CDY02453 | Canola | nucleus | 40.34 | 26.53 |
| AT1G55250.1 | Thale cress | nucleus | 38.62 | 24.89 |
| HORVU0Hr1G018210.6 | Barley | nucleus | 23.79 | 15.81 |
| Solyc01g006030.2.1 | Tomato | nucleus | 0.52 | 0.88 |
| TraesCS3D01G465000.1 | Wheat | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G099950.5 | EnsemblPlantsGene:HORVU3Hr1G099950 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:E3_ubiquit_lig_Bre1 | ncoils:Coil | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF0 | SEG:seg |
| UniParc:UPI000B470EF9 | UniProt:A0A287MHK9 | MapMan:19.2.2.1.5.3.2 | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:662686194..662693151
Molecular Weight (calculated)
65281.9 Da
IEP (calculated)
4.702
GRAVY (calculated)
-0.640
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: CFGVDRGNLE APGVRPTRGQ KKAQHRVWSL DPDRTASPHT RESSCFLSLS CGGGGVPAAG GAPSKMDATA LQHENQKLVQ QLEAQKSEMH VLEAKFKELR
101: NEQSSYDNTL ISLDKTWNQL VDDLILLGVR FGGGLNNLPA LDHEELSEES IESCPSEEIF LFMLLKSNNY GKKDDNSFLE FAEEALALRR SATLALMRSL
201: QEAIAAQQAR SEHLSLALNG EKSNEDVVVA LQNHNDHLKE VVGNVREAIS IVNEKHKRYL DEIEAFKSSY SKELQEIKHL SGELEETMAE LEESRRKLVI
301: LQLQRHGGSL MNMSGPNAVN GAVSADKSSD KNMGWGDLKD AVEEVKTISA NRLFELHETQ EDNLILSGQL EDLQGQLKDD NYIFTSKPYT ILSDQLHHLN
401: AEIERYKGLV EVLQNDKNQF LQREKEMCAK GESVDNIKQS ITAYEAKIEE LEHQILKSMS EKNDLEIKVE ESLQDSGKKD FKDEIHVMAA ALSKEMEMME
501: NQLNRSKDAA SEALALREEA GSLRSLLAKK ISEQKEISDR YNEQVSEIKS LKELIETLEK ENQELEFIVD MYGKECSESR
101: NEQSSYDNTL ISLDKTWNQL VDDLILLGVR FGGGLNNLPA LDHEELSEES IESCPSEEIF LFMLLKSNNY GKKDDNSFLE FAEEALALRR SATLALMRSL
201: QEAIAAQQAR SEHLSLALNG EKSNEDVVVA LQNHNDHLKE VVGNVREAIS IVNEKHKRYL DEIEAFKSSY SKELQEIKHL SGELEETMAE LEESRRKLVI
301: LQLQRHGGSL MNMSGPNAVN GAVSADKSSD KNMGWGDLKD AVEEVKTISA NRLFELHETQ EDNLILSGQL EDLQGQLKDD NYIFTSKPYT ILSDQLHHLN
401: AEIERYKGLV EVLQNDKNQF LQREKEMCAK GESVDNIKQS ITAYEAKIEE LEHQILKSMS EKNDLEIKVE ESLQDSGKKD FKDEIHVMAA ALSKEMEMME
501: NQLNRSKDAA SEALALREEA GSLRSLLAKK ISEQKEISDR YNEQVSEIKS LKELIETLEK ENQELEFIVD MYGKECSESR
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.