CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74700
CDX84034
CDX96859
CDY02453
CDY10575
CDY18962
CDY27400
CDY37020
CDY39315
CDY65754

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	CDX84034	AT1G14400.1	18849490
AT1G55250.1	CDX96859	AT1G14400.1	18849490
AT1G55250.1	CDY39315	AT1G14400.1	18849490
AT1G55250.1	CDY02453	AT1G55250.1	18849490
AT1G55250.1	CDY10575	AT1G55250.1	18849490
AT1G55250.1	CDY65754	AT1G55250.1	18849490
AT1G55250.1	CDX74700	AT2G44950.1	18849490
AT1G55250.1	CDY18962	AT2G44950.1	18849490
AT1G55250.1	CDY27400	AT2G44950.1	18849490
AT1G55250.1	CDY37020	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030874.1-P	Field mustard	nucleus	99.43	99.43
CDY10575	Canola	nucleus	99.32	99.09
CDY65754	Canola	cytosol	18.59	94.8
AT1G55250.1	Thale cress	nucleus	85.49	83.78
Solyc01g006030.2.1	Tomato	nucleus	24.38	63.42
VIT_06s0004g00950.t01	Wine grape	nucleus	63.15	63.37
TraesCS3D01G465000.1	Wheat	nucleus	11.11	59.39
KRH14812	Soybean	nucleus	56.12	56.19
KRH73326	Soybean	nucleus	55.78	55.85
GSMUA_Achr6P06310_001	Banana	nucleus	51.25	51.89
TraesCS3D01G462600.5	Wheat	nucleus	49.09	51.3
TraesCS3B01G511800.1	Wheat	nucleus	49.09	51.3
TraesCS3D01G466100.1	Wheat	nucleus	49.09	51.3
TraesCS3A01G467300.1	Wheat	nucleus	49.09	51.3
Os10t0565600-01	Rice	nucleus	48.64	50.83
Solyc01g006040.2.1	Tomato	nucleus	31.29	49.73
Zm00001d029490_P004	Maize	nucleus	46.83	46.15
TraesCS3A01G469800.2	Wheat	cytosol	22.79	44.08
OQU92405	Sorghum	cytosol, mitochondrion	47.96	43.88
TraesCS3D01G465100.1	Wheat	cytosol	23.13	43.5
HORVU3Hr1G099950.5	Barley	cytosol	26.53	40.34
CDY18962	Canola	nucleus	29.02	29.32
CDX74700	Canola	nucleus	28.57	28.6
CDY27400	Canola	nucleus	27.89	28.18
CDY37020	Canola	nucleus	27.55	27.71

Protein Annotations

Gene3D:1.20.5.340	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	GO:A0A078ESB4	EnsemblPlants:CDY02453	ProteinID:CDY02453
ProteinID:CDY02453.1	ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010390	GO:GO:0016043
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00114078001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920
ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF0	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0004EE0AA1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

BnaA08g00600D

Coordinates

chrLK031935:-:98924..104154

Molecular Weight (calculated)

100697.0 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.698

Length

882 amino acids

Sequence
(BLAST)

001: MESQDSDEPM QKKPHLLDSV SPTATAPNSS PSHPVAKSVD ATVLQLQNQK LVQQLDLQKK RMYDVETKIH ELHLNQSSYD DQLISVNRLW NQLVDDLVLL
101: GVRAGANQEA LKYLDIADKK RGSVPPCAAD EMFLCRLLEV DSIGSSNSDE VVRKVEEALS LRHSSTVELM GVFENTIATQ RTKAESISQN LQAVKSAEDA
201: TVQLSNINDL MKEEARNLRE MIDALNARHK EQTEQIQAYV CSHSTDQSEL KHLKGELEEI KAELEENRRK LINLKMQKDA ACEGHVTSSP AVANGSVSPE
301: KPVDKTKLRE LKDSIDEIKI VAEGRLSELQ AAQEYNLSLS RQCEDIENEL KDDQYIYSSR LYNLIKEQLH HWNDDVDRYK LLSEAAQAER SFVMRREKDL
401: NQREESLEAA KQKITSVGSR IEVLEQKLQS CIVEKNGLEL ETEEAIQDSE RQDIKREFIT MASTLSKEME MMEAQLKRWK NTAHDALDLR QQAQSLRVSL
501: SNKADEQKGL ENKCAEQMAE IKSLKALIEK LLKEKLELQN LASIYTRECN DERGLAEIKE SQRKAQAQAE ELKNVLDEHF LELRVKAANE TETACQERLA
601: TAKAEIAELR TQLDVSEREV LELKEGIKVK EQEAEALIAE METVGQAYED MQTQNQHLLQ QVAERDDYNI KLVSESVKTK HAYNTHLSEK QVMEKQLQNV
701: NASVETLKAR IAHSEEQMKG CFAEAYKLIQ EDRHLVLSLE TAKGELADAE KEFRWIKSAV SSSEKEYEQI SRRTDEIKLE LDDERSEKKK LEEELMELNK
801: ELEELGSESV EAATLRLQEE VKNCKNILKC GVCFDRPKEV VIMKCFHLFC KQCIQRSLEI RHRKCPGCGT AFGQSDVRVV KM

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.