Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G469800.2 | Wheat | cytosol | 39.1 | 47.59 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 40.18 | 47.55 |
| CDY65754 | Canola | cytosol | 14.05 | 45.09 |
| HORVU3Hr1G099950.5 | Barley | cytosol | 43.78 | 41.9 |
| VIT_06s0004g00950.t01 | Wine grape | nucleus | 61.08 | 38.57 |
| KRH14812 | Soybean | nucleus | 52.07 | 32.8 |
| KRH73326 | Soybean | nucleus | 51.71 | 32.58 |
| Bra030874.1-P | Field mustard | nucleus | 49.73 | 31.29 |
| CDY02453 | Canola | nucleus | 49.73 | 31.29 |
| CDY10575 | Canola | nucleus | 49.73 | 31.22 |
| AT1G55250.1 | Thale cress | nucleus | 50.27 | 31.0 |
| GSMUA_Achr6P06310_001 | Banana | nucleus | 47.03 | 29.97 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 44.32 | 29.15 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 43.78 | 28.79 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 43.6 | 28.67 |
| TraesCS3A01G467300.1 | Wheat | nucleus | 43.24 | 28.44 |
| Os10t0565600-01 | Rice | nucleus | 42.7 | 28.08 |
| Zm00001d029490_P004 | Maize | nucleus | 42.16 | 26.15 |
| OQU92405 | Sorghum | cytosol, mitochondrion | 43.06 | 24.79 |
| Solyc11g013370.1.1 | Tomato | nucleus | 28.29 | 18.54 |
| Solyc01g006030.2.1 | Tomato | nucleus | 0.72 | 1.18 |
| TraesCS3D01G465000.1 | Wheat | nucleus | 0.18 | 0.61 |
Protein Annotations
| EnsemblPlants:Solyc01g006040.2.1 | EnsemblPlantsGene:Solyc01g006040.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:E3_ubiquit_lig_Bre1 | ncoils:Coil | PANTHER:PTHR23163 | PANTHER:PTHR23163:SF0 | SEG:seg |
| UniParc:UPI0002761EC3 | UniProt:K4ASH0 | MapMan:19.2.2.1.5.3.2 | : | : | : |
Description
No Description!
Coordinates
chr1:-:716528..726655
Molecular Weight (calculated)
63075.7 Da
IEP (calculated)
5.621
GRAVY (calculated)
-0.663
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSAAASDE PQKKRPHLNS VFSSPTMARH LKTSSDNKDV DAAVLQHQNQ KLVQQLDAQK HKLHDLEAKM KELRDKQASY DDFLVTLNRI WNQLDDDLII
101: LGVHSMADQI SLQSLDHQDY SGGSIPSCPA EEIFLCRVLK TNAIPGNAND VSIVNIREAL DLRHSSTLEL MKSLQNAIDA QRIKTENLAH LLEGKTSAED
201: GIIILSKIDD MMKEEANYLR QVIDVLHLKH KAYADAIEAC NQRQSADQSE LKRLEGELEE SMTELEDSRR KLVTLKMQKD VACGGQETIS SAVNGSMSPE
301: KHTDRTKGVR ELKESIEEAK ILKEDRLSEL HDAQEDNLHL SKQLQDLQNE LKDDRYVHSS RAYTLCNDQL HHWNSEAERY KALADSLQAD RSFIGRREKE
401: LALKAEAVDA AKKAVDNSES RIEELEHRMH RYIIEKNELE IKMEEAIQDS GRKDIKEEFQ IMGSALSKEI GMMEAQLNRW KETAQEAVSL RKERRSLETS
501: LERKVIEHKD LIGKCAHQTG EIRTLKELVS FSADLFFYQG LSFSVKVMCP SLLAG
101: LGVHSMADQI SLQSLDHQDY SGGSIPSCPA EEIFLCRVLK TNAIPGNAND VSIVNIREAL DLRHSSTLEL MKSLQNAIDA QRIKTENLAH LLEGKTSAED
201: GIIILSKIDD MMKEEANYLR QVIDVLHLKH KAYADAIEAC NQRQSADQSE LKRLEGELEE SMTELEDSRR KLVTLKMQKD VACGGQETIS SAVNGSMSPE
301: KHTDRTKGVR ELKESIEEAK ILKEDRLSEL HDAQEDNLHL SKQLQDLQNE LKDDRYVHSS RAYTLCNDQL HHWNSEAERY KALADSLQAD RSFIGRREKE
401: LALKAEAVDA AKKAVDNSES RIEELEHRMH RYIIEKNELE IKMEEAIQDS GRKDIKEEFQ IMGSALSKEI GMMEAQLNRW KETAQEAVSL RKERRSLETS
501: LERKVIEHKD LIGKCAHQTG EIRTLKELVS FSADLFFYQG LSFSVKVMCP SLLAG
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.