Factsheet for AT1G55250.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030874.1-P	Field mustard	nucleus	84.0	85.71
CDY10575	Canola	nucleus	84.0	85.52
CDY02453	Canola	nucleus	83.78	85.49
CDY65754	Canola	cytosol	14.44	75.14
VIT_06s0004g00950.t01	Wine grape	nucleus	61.33	62.8
Solyc01g006030.2.1	Tomato	nucleus	23.44	62.24
TraesCS3D01G465000.1	Wheat	nucleus	10.89	59.39
KRH14812	Soybean	nucleus	55.89	57.09
KRH73326	Soybean	nucleus	55.11	56.3
GSMUA_Achr6P06310_001	Banana	nucleus	50.11	51.78
TraesCS3A01G467300.1	Wheat	nucleus	47.22	50.36
Solyc01g006040.2.1	Tomato	nucleus	31.0	50.27
TraesCS3D01G462600.5	Wheat	nucleus	47.11	50.24
TraesCS3B01G511800.1	Wheat	nucleus	47.0	50.12
TraesCS3D01G466100.1	Wheat	nucleus	47.0	50.12
Os10t0565600-01	Rice	nucleus	46.33	49.41
Zm00001d029490_P004	Maize	nucleus	45.0	45.25
OQU92405	Sorghum	cytosol, mitochondrion	46.33	43.26
TraesCS3A01G469800.2	Wheat	cytosol	21.33	42.11
TraesCS3D01G465100.1	Wheat	cytosol	21.56	41.36
HORVU3Hr1G099950.5	Barley	cytosol	24.89	38.62
AT2G44950.1	Thale cress	nucleus	27.0	27.68

Protein Annotations

Gene3D:1.20.5.340	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EntrezGene:841968	ProteinID:AAG51572.1	ProteinID:AEE33210.1
ProteinID:AEE33211.1	ArrayExpress:AT1G55250	EnsemblPlantsGene:AT1G55250	RefSeq:AT1G55250	TAIR:AT1G55250	RefSeq:AT1G55250-TAIR-G
EnsemblPlants:AT1G55250.1	TAIR:AT1G55250.1	EMBL:AY085755	Unigene:At.37093	EMBL:BT029207	ncoils:Coil
InterPro:E3_ubiquit_lig_Bre1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006325
GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653
GO:GO:0009791	GO:GO:0009965	GO:GO:0009987	GO:GO:0010162	GO:GO:0010228	GO:GO:0010390
GO:GO:0016043	GO:GO:0016567	GO:GO:0016569	GO:GO:0016740	GO:GO:0019538	GO:GO:0033523
GO:GO:0042803	GO:GO:0045087	GO:GO:0046872	Symbol:HUB2	InterPro:IPR001841	InterPro:IPR013083
RefSeq:NP_001154428.1	RefSeq:NP_564680.4	PFAM:PF13920	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0006339	PO:PO:0006340	PO:PO:0007064	PO:PO:0007095	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00518
PFscan:PS50089	PANTHER:PTHR23163	PANTHER:PTHR23163:SF0	UniProt:Q9C895	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0001A7B1C1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:

Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]

Coordinates

chr1:+:20607214..20612378

Molecular Weight (calculated)

103402.0 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.665

Length

900 amino acids

Sequence
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVS FFDCDFSLLC LRLVDYEIDV DATVLQLQNQ KLVQQLDLQK KQLYDVESKI QELQLNQTSY
101: DDELISVNQL WNQLVDDLIL LGVRAGANQE ALNYLDIVDK KRVPPCAADE TFLCRLLQVD SLDTSKSDEV VRKVEEALAL RHSSTMELMG LFENTIDTQK
201: TKAESISQSL HAVKSTEDAT IQLSSINDLM KEESKNLREM IDALHVRHKE HSEQIQAYIS SHSTDQSELK HLKGQLEEIK AELEENRRKL ITLKMQKDAA
301: CEGHVTSPAI ANGSLSPEKP VDKTKLRELK DSIDEIKIMA EGRLSELQAS QEYNLSLSRQ CQDIENELKD DQYIYSSRLY SLINDRIHHW NAELDRYKIL
401: TEAIQAERSF VMRRDKELNL RAESLEAANH KTTTVGSRIE VLEKKLQSCI IEKNGLELET EEAIQDSERQ DIKSEFIAMA STLSKEMEMM EAQLKRWKDT
501: AQDALYLREQ AQSLRVSLSN KADEQKGLED KCAKQMAEIK SLKALIEKLL KEKLQLQNLA SICTRECNDD RGLAEIKDSQ RKAQAQAEEL KNVLDEHFLE
601: LRVKAAHETE SACQERLATA KAEIAELRTQ LDLSEREVLE LKEGIKVKEQ EAEASIAEME TIGQAYEDMQ TQNQHLLQQV AERDDYNIKL VSESVKTKHA
701: YNTHLSEKQV MEKQLHQVNA SVENFKARIA HNEEQMKGCF SEAYKLIQED RHLVISLETT KWEVADADKE FRWLKSAVSS SEKEYEQISR RTDDIKLELD
801: DERREKKKLE EELMELNKEL EELGSESVEA AIVRLQEEVK NCKNILKCGV CFDRPKEVVI VKCYHLFCQQ CIQRSLEIRH RKCPGCGTAF GQNDVRLVKM

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.