Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55250.1 | KRG99148 | AT1G14400.1 | 18849490 |
| AT1G55250.1 | KRH14812 | AT1G55250.1 | 18849490 |
| AT1G55250.1 | KRH73326 | AT1G55250.1 | 18849490 |
| AT1G55250.1 | KRH30315 | AT2G44950.1 | 18849490 |
| AT1G55250.1 | KRH75261 | AT2G44950.1 | 18849490 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73326 | Soybean | nucleus | 95.12 | 95.12 |
| VIT_06s0004g00950.t01 | Wine grape | nucleus | 66.29 | 66.44 |
| Solyc01g006030.2.1 | Tomato | nucleus | 24.97 | 64.9 |
| TraesCS3D01G465000.1 | Wheat | nucleus | 11.35 | 60.61 |
| Bra030874.1-P | Field mustard | nucleus | 56.3 | 56.24 |
| CDY02453 | Canola | nucleus | 56.19 | 56.12 |
| CDY10575 | Canola | nucleus | 56.3 | 56.11 |
| AT1G55250.1 | Thale cress | nucleus | 57.09 | 55.89 |
| GSMUA_Achr6P06310_001 | Banana | nucleus | 54.6 | 55.22 |
| TraesCS3D01G462600.5 | Wheat | nucleus | 50.74 | 52.96 |
| TraesCS3B01G511800.1 | Wheat | nucleus | 50.51 | 52.73 |
| TraesCS3D01G466100.1 | Wheat | nucleus | 50.4 | 52.61 |
| TraesCS3A01G467300.1 | Wheat | nucleus | 50.17 | 52.37 |
| Solyc01g006040.2.1 | Tomato | nucleus | 32.8 | 52.07 |
| Os10t0565600-01 | Rice | nucleus | 49.72 | 51.9 |
| CDY65754 | Canola | cytosol | 9.42 | 47.98 |
| Zm00001d029490_P004 | Maize | nucleus | 47.9 | 47.15 |
| OQU92405 | Sorghum | cytosol, mitochondrion | 48.69 | 44.5 |
| TraesCS3D01G465100.1 | Wheat | cytosol | 23.61 | 44.35 |
| TraesCS3A01G469800.2 | Wheat | cytosol | 22.7 | 43.86 |
| HORVU3Hr1G099950.5 | Barley | cytosol | 27.36 | 41.55 |
| KRH30315 | Soybean | nucleus | 32.92 | 32.99 |
| KRH75261 | Soybean | nucleus | 32.69 | 32.73 |
Protein Annotations
| Gene3D:1.20.1270.60 | EntrezGene:100796610 | MapMan:19.2.2.1.5.3.2 | Gene3D:3.30.40.10 | EMBL:ACUP02008527 | InterPro:AH/BAR_dom_sf |
| ncoils:Coil | InterPro:E3_ubiquit_lig_Bre1 | EnsemblPlantsGene:GLYMA_14G050200 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010390 | GO:GO:0016043 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR027267 | UniProt:K7M511 |
| EnsemblPlants:KRH14812 | ProteinID:KRH14812 | ProteinID:KRH14812.1 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 |
| PANTHER:PTHR23163 | PANTHER:PTHR23163:SF0 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029591B0 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr14:+:3939136..3949310
Molecular Weight (calculated)
100495.0 Da
IEP (calculated)
4.784
GRAVY (calculated)
-0.709
Length
881 amino acids
Sequence
(BLAST)
(BLAST)
001: MENSDHDEPE KKRPHLTSVS SRTPRNSINS PTNNKTADAG VLQFQNQQLV QQIDIQKHAL HDLEEKIREL KGKQSSYDDL LIALNQLWTQ LVDDMILLGI
101: RAGRGKGKDT LQHLTDIDNP QGSVPLCPAE DMFLCRLIQK DSIKGISDDE IISYVEEALA LRQSYTRELL KLLKDTIDDQ MERAGSIAQV LHGDLSSEDA
201: IIQMSKIDDM TKEEVDNFRE VVDTLHAKHK EYTVAIQNSI NEYSQDQSEI KRLAGELDEI VAELEESRRK LVNLEMQKDA AIGMNSPKAD AVNGNLSPEN
301: IADRTMGLRE LKDSIEEAKI VDADRLSELQ DAQEDNQTLT KQFQDLQNEL KDDKYVRTSR IYSLANDQLQ HWMTELARYK TSVESLQAGS VHVAKWENEL
401: NLKLESADSA RQILGNSDHR IDDLELQLQK CIIEKNDLEI KMEEAKQDTG RKDIKSEFHV MASALSKEMG MMEGQLKRWK DAAHEAVSLR EKAHSLREAL
501: STKTSELKSL ANKCAEQVLE IKSLKTLTEK LQKENQELEF VLDMHGLENY DKRYSEVRES ESKAHSQAEM LKNALDEHSL ELRVKAANEA EAACEQRLSA
601: AEAEIEDLRS KLDASERDIL ELTEAVKVKD AEAEAYISEI ETIGQAYEDM QTQNQNLLNQ VIERDDYNIK LVSDSVKTKQ AHNTLMSQKQ ALAKQLQQIN
701: TSIENSKTRI THSEEQMKAI LSDAIKCNQE EKHLAVTLEF AKWELADAEK ELKLLKSAVS SSEKEYDQIQ KDTEAIEMEL ESERSLRKKL EEELRELNCK
801: IDELTSETGE TTIQKLEKEI RICKNMIKCT VCTDRPKEVV IVKCYHLFCN PCIQRNLELR HRKCPACGTA FGQSDVRFVK I
101: RAGRGKGKDT LQHLTDIDNP QGSVPLCPAE DMFLCRLIQK DSIKGISDDE IISYVEEALA LRQSYTRELL KLLKDTIDDQ MERAGSIAQV LHGDLSSEDA
201: IIQMSKIDDM TKEEVDNFRE VVDTLHAKHK EYTVAIQNSI NEYSQDQSEI KRLAGELDEI VAELEESRRK LVNLEMQKDA AIGMNSPKAD AVNGNLSPEN
301: IADRTMGLRE LKDSIEEAKI VDADRLSELQ DAQEDNQTLT KQFQDLQNEL KDDKYVRTSR IYSLANDQLQ HWMTELARYK TSVESLQAGS VHVAKWENEL
401: NLKLESADSA RQILGNSDHR IDDLELQLQK CIIEKNDLEI KMEEAKQDTG RKDIKSEFHV MASALSKEMG MMEGQLKRWK DAAHEAVSLR EKAHSLREAL
501: STKTSELKSL ANKCAEQVLE IKSLKTLTEK LQKENQELEF VLDMHGLENY DKRYSEVRES ESKAHSQAEM LKNALDEHSL ELRVKAANEA EAACEQRLSA
601: AEAEIEDLRS KLDASERDIL ELTEAVKVKD AEAEAYISEI ETIGQAYEDM QTQNQNLLNQ VIERDDYNIK LVSDSVKTKQ AHNTLMSQKQ ALAKQLQQIN
701: TSIENSKTRI THSEEQMKAI LSDAIKCNQE EKHLAVTLEF AKWELADAEK ELKLLKSAVS SSEKEYDQIQ KDTEAIEMEL ESERSLRKKL EEELRELNCK
801: IDELTSETGE TTIQKLEKEI RICKNMIKCT VCTDRPKEVV IVKCYHLFCN PCIQRNLELR HRKCPACGTA FGQSDVRFVK I
001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M
Arabidopsis Description
HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.