Factsheet for Bra030874.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004879.1-P
Bra016703.1-P
Bra030874.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55250.1	Bra016703.1-P	AT1G14400.1	18849490
AT1G55250.1	Bra030874.1-P	AT1G55250.1	18849490
AT1G55250.1	Bra004879.1-P	AT2G44950.1	18849490
AT1G55250.1	Bra040332.1-P	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02453	Canola	nucleus	99.43	99.43
CDY65754	Canola	cytosol	18.48	94.22
AT1G55250.1	Thale cress	nucleus	85.71	84.0
VIT_06s0004g00950.t01	Wine grape	nucleus	62.93	63.14
Solyc01g006030.2.1	Tomato	nucleus	24.26	63.13
TraesCS3D01G465000.1	Wheat	nucleus	11.0	58.79
KRH14812	Soybean	nucleus	56.24	56.3
KRH73326	Soybean	nucleus	55.78	55.85
GSMUA_Achr6P06310_001	Banana	nucleus	51.25	51.89
TraesCS3D01G466100.1	Wheat	nucleus	49.09	51.3
TraesCS3A01G467300.1	Wheat	nucleus	49.09	51.3
TraesCS3D01G462600.5	Wheat	nucleus	49.09	51.3
TraesCS3B01G511800.1	Wheat	nucleus	49.09	51.3
Os10t0565600-01	Rice	nucleus	48.53	50.71
Solyc01g006040.2.1	Tomato	nucleus	31.29	49.73
Zm00001d029490_P004	Maize	nucleus	46.83	46.15
TraesCS3A01G469800.2	Wheat	cytosol	22.9	44.3
OQU92405	Sorghum	cytosol, mitochondrion	47.96	43.88
TraesCS3D01G465100.1	Wheat	cytosol	23.24	43.71
HORVU3Hr1G099950.5	Barley	cytosol	26.64	40.52
Bra004879.1-P	Field mustard	nucleus	28.34	27.65
Bra040332.1-P	Field mustard	nucleus	27.44	27.53

Protein Annotations

Gene3D:1.20.5.340	MapMan:19.2.2.1.5.3.2	Gene3D:3.30.40.10	EnsemblPlantsGene:Bra030874	EnsemblPlants:Bra030874.1	EnsemblPlants:Bra030874.1-P
ncoils:Coil	InterPro:E3_ubiquit_lig_Bre1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653
GO:GO:0009791	GO:GO:0009965	GO:GO:0009987	GO:GO:0010162	GO:GO:0010228	GO:GO:0010390
GO:GO:0016043	GO:GO:0016740	GO:GO:0019538	GO:GO:0033523	GO:GO:0042803	GO:GO:0045087
InterPro:IPR001841	InterPro:IPR013083	UniProt:M4EQ03	PFAM:PF13920	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR23163	PANTHER:PTHR23163:SF0	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254723F	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

AT1G55250 (E=0.0) HUB2 | HUB2 (HISTONE MONO-UBIQUITINATION 2); protein binding / zinc ion binding

Coordinates

chrA08:-:426414..431087

Molecular Weight (calculated)

100662.0 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.700

Length

882 amino acids

Sequence
(BLAST)

001: MESQDSDEPM QKKPHLLDSV SPTATAPNSS PSHPVAKSVD ATVLQLQNQK LVQQLDLQKK RMYDVETKIH ELHLNQSSYD DQLISVNRLW NQLVDDLVLL
101: GVRAGANQEA LKYLDIADKK RGSVPPCAAD EMFLCRLLEV DSIGASNSDE VVRKVEEALS LRHSSTVELM GVFENTIATQ RTKAESISQN LQAVKSAEDA
201: TVQLSNINDL MKEEARNLRE MIDALNARHK EHTEQIQAYV SSHSTDQSEL KHLKGELEEI KAELEENRRK LINLKMQKDA ACEGHVTSSP AVANGSVSPE
301: KPVDKTKLRE LKDSIDEIKI VAEGRLSELQ AAQEYNLSLS RQCEDIENEL KDDQYIYSSR LYNLIKEQLH HWNDDVDRYK LLSEAAQAER SFVMRREKDL
401: NQREESLEAA KQKITSVGSR IEVLEQKLQS CIVEKNGLEL ETEEAIQDSE RQDIKREFIT MASTLSKEME MMEAQLKRWK NTAHDALDLR QQAQSLRVSL
501: SNKADEQKGL ENKCAEQMAE IKSLKALIEK LLKEKLELQN LASIYTRECN DERGLAEIKE SQQKAQAQAE ELKNVLDEHF LELRVKAANE TETACQERLA
601: TAKAEIAELR TQLDVSEREV LELKEGIKVK EQEAEALIAE METVGQAYED MQTQNQHLLQ QVAERDDYNI KLVSESVKTK HAYNTHLSEK QVMEKQLQNV
701: NASVETLKAR IAHSEEQMKG CFSEAYKLIQ EDRHLVLSLE TAKGELADAE KEFRWIKSAV SSSEKEYEQI SRRTDEIKLE LDDERSEKKK LEEELMELNK
801: ELEELGSESV EAATLRLQEE VKNCKNILKC GVCFDRPKEV VIMKCFHLFC KQCIQRSLEI RHRKCPGCGT AFGQSDVRVV KM

Best Arabidopsis Sequence Match ( AT1G55250.5 )
(BLAST)

001: MENQESDEPM QKKPHLLDSV SPNSMARNSS PSHPIAKSVD ATVLQLQNQK LVQQLDLQKK QLYDVESKIQ ELQLNQTSYD DELISVNQLW NQLVDDLILL
101: GVRAGANQEA LNYLDIVDKK RGSVPPCAAD ETFLCRLLQV DSLDTSKSDE VVRKVEEALA LRHSSTMELM GLFENTIDTQ KTKAESISQS LHAVKSTEDA
201: TIQLSSINDL MKEESKNLRE MIDALHVRHK EHSEQIQAYI SSHSTDQSEL KHLKGQLEEI KAELEENRRK LITLKMQKDA ACEGHVTSPA IANGSLSPEK
301: PVDKTKLREL KDSIDEIKIM AEGRLSELQA SQEYNLSLSR QCQDIENELK DDQYIYSSRL YSLINDRIHH WNAELDRYKI LTEAIQAERS FVMRRDKELN
401: LRAESLEAAN HKTTTVGSRI EVLEKKLQSC IIEKNGLELE TEEAIQDSER QDIKSEFIAM ASTLSKEMEM MEAQLKRWKD TAQDALYLRE QAQSLRVSLS
501: NKADEQKGLE DKCAKQMAEI KSLKALIEKL LKEKLQLQNL ASICTRECND DRGLAEIKDS QRKAQAQAEE LKNVLDEHFL ELRVKAAHET ESACQERLAT
601: AKAEIAELRT QLDLSEREVL ELKEGIKVKE QEAEASIAEM ETIGQAYEDM QTQNQHLLQQ VAERDDYNIK LVSESVKTKH AYNTHLSEKQ VMEKQLHQVN
701: ASVENFKARI AHNEEQMKGC FSEAYKLIQE DRHLVISLET TKWEVADADK EFRWLKSAVS SSEKEYEQIS RRTDDIKLEL DDERREKKKL EEELMELNKE
801: LEELGSESVE AAIVRLQEEV KNCKNILKCG VCFDRPKEVV IVKCYHLFCQ QCIQRSLEIR HRKCPGCGTA FGQNDVRLVK M

Arabidopsis Description

HUB2E3 ubiquitin-protein ligase BRE1-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C895]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.