Factsheet for Bra016703.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004879.1-P
Bra030874.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14400.1	Bra030874.1-P	AT1G55250.1	18849490
AT1G14400.1	Bra004879.1-P	AT2G44950.1	18849490
AT1G14400.1	Bra040332.1-P	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G14400.1	Thale cress	mitochondrion, nucleus	72.38	100.0
Bra026833.1-P	Field mustard	mitochondrion, nucleus	72.38	100.0
Bra026582.1-P	Field mustard	mitochondrion, nucleus	71.43	98.68
Bra024808.1-P	Field mustard	mitochondrion, nucleus	71.43	98.68
Bra026222.1-P	Field mustard	mitochondrion, nucleus	70.95	98.03
Bra017410.1-P	Field mustard	mitochondrion, nucleus	70.95	98.03
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	69.05	95.39
Bra016264.1-P	Field mustard	mitochondrion	68.1	94.08
TraesCS3B01G131500.2	Wheat	nucleus	66.67	92.11
Solyc02g067420.2.1	Tomato	nucleus	65.24	90.13
Bra016704.1-P	Field mustard	nucleus	64.29	88.82
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	64.29	88.82
TraesCS3A01G112600.1	Wheat	mitochondrion	67.14	87.04
TraesCS3D01G114600.3	Wheat	mitochondrion	67.14	87.04
Bra029252.1-P	Field mustard	mitochondrion, nucleus	61.9	86.67
KRG99148	Soybean	mitochondrion	51.43	82.44
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	73.33	77.0
HORVU3Hr1G020470.1	Barley	plastid	71.43	66.08
Bra027688.1-P	Field mustard	cytosol	24.29	45.95
Bra041101.1-P	Field mustard	cytosol	31.9	45.27
Bra001347.1-P	Field mustard	cytosol	31.9	45.27
Bra029076.1-P	Field mustard	cytosol	31.43	44.59
Bra003066.1-P	Field mustard	cytosol	31.43	44.59
Bra022645.1-P	Field mustard	cytosol	31.43	44.59
Bra035605.1-P	Field mustard	cytosol	30.95	43.92
Bra028946.1-P	Field mustard	cytosol	28.57	42.86
Bra002842.1-P	Field mustard	cytosol	29.05	41.22
Bra013049.1-P	Field mustard	cytosol	28.57	40.54
Bra027749.1-P	Field mustard	nucleus	28.1	38.82
Bra026018.1-P	Field mustard	cytosol	26.67	36.6
Bra026700.1-P	Field mustard	cytosol	26.67	36.6
Bra032244.1-P	Field mustard	cytosol	25.71	36.0
Bra016626.1-P	Field mustard	cytosol	26.19	35.95
Bra008383.1-P	Field mustard	cytosol	26.19	35.95
Bra035071.1-P	Field mustard	cytosol	22.86	34.53
Bra001995.1-P	Field mustard	cytosol	28.57	33.33
Bra027422.1-P	Field mustard	plastid	24.29	27.87
Bra029711.1-P	Field mustard	nucleus	31.9	21.61

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra016703	EnsemblPlants:Bra016703.1	EnsemblPlants:Bra016703.1-P	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009791	GO:GO:0009987	GO:GO:0010228	GO:GO:0016043	GO:GO:0016740	GO:GO:0019538
GO:GO:0033523	InterPro:IPR000608	InterPro:IPR016135	UniProt:M4DJM5	PFAM:PF00179	ScanProsite:PS00183
PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF5	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002545C75	:	:	:

Description

AT1G14400 (E=9e-088) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase

Coordinates

chrA08:+:19615071..19616456

Molecular Weight (calculated)

23940.2 Da

IEP (calculated)

8.481

GRAVY (calculated)

-0.720

Length

210 amino acids

Sequence
(BLAST)

001: MSEEQQRSSS LRTINVSRVP NHSLSSHGEP APPDSRIPLI FHRRSSPPRR CSLELERRMS TPARKRLMRD FKRLQQDPPA GISGAPQDNN IMLWNAVIFG
101: PDDTPWDGGT FKLSLQFSED YPNKPPTVRF VSRMFHPNIY ADGSICLDIL QNQWSPIYDV AAILTSIQSL LCDPNPNSPA NSEAARMYSE SKREYNRRVR
201: DVVEQSWTAD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.