Factsheet for HORVU3Hr1G020470.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018210.6
HORVU3Hr1G099950.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14400.1	HORVU3Hr1G099950.5	AT1G55250.1	18849490
AT1G14400.1	HORVU0Hr1G018210.6	AT2G44950.1	18849490

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G131500.2	Wheat	nucleus	66.96	100.0
TraesCS3D01G114600.3	Wheat	mitochondrion	68.28	95.68
TraesCS3A01G112600.1	Wheat	mitochondrion	68.28	95.68
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	63.88	95.39
AT2G02760.2	Thale cress	mitochondrion, nucleus	62.56	93.42
Bra026582.1-P	Field mustard	mitochondrion, nucleus	62.56	93.42
Bra024808.1-P	Field mustard	mitochondrion, nucleus	62.56	93.42
Bra017410.1-P	Field mustard	mitochondrion, nucleus	62.56	93.42
Bra026222.1-P	Field mustard	mitochondrion, nucleus	62.11	92.76
AT1G14400.1	Thale cress	mitochondrion, nucleus	61.67	92.11
Bra026833.1-P	Field mustard	mitochondrion, nucleus	61.67	92.11
CDY39315	Canola	mitochondrion	61.23	91.45
Solyc02g067420.2.1	Tomato	nucleus	60.35	90.13
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	59.47	88.82
Bra016704.1-P	Field mustard	nucleus	56.39	84.21
CDX84034	Canola	nucleus	39.21	83.18
KRG99148	Soybean	mitochondrion	46.26	80.15
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	65.2	74.0
Bra016703.1-P	Field mustard	nucleus	66.08	71.43
CDX96859	Canola	mitochondrion	57.71	69.31
HORVU1Hr1G027600.1	Barley	plastid	66.52	63.98
HORVU3Hr1G059290.1	Barley	cytosol	28.63	44.22
HORVU7Hr1G080800.2	Barley	cytosol, nucleus, peroxisome	28.63	43.92
HORVU0Hr1G002220.2	Barley	cytosol, nucleus, peroxisome	28.19	43.24
HORVU3Hr1G080790.2	Barley	cytosol	28.19	42.38
HORVU2Hr1G118240.5	Barley	cytosol	23.79	42.19
HORVU5Hr1G053810.1	Barley	cytosol	25.99	39.86
HORVU5Hr1G055360.2	Barley	cytosol, mitochondrion	26.43	38.71
HORVU1Hr1G086610.1	Barley	cytosol, plastid	25.55	33.33
HORVU1Hr1G086460.1	Barley	endoplasmic reticulum, extracellular	13.66	32.63
HORVU1Hr1G086480.1	Barley	mitochondrion	25.55	30.21
HORVU1Hr1G069530.1	Barley	cytosol, plastid	28.19	30.05
HORVU3Hr1G061790.1	Barley	cytosol	25.99	29.06

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	UniProt:A0A287KD05	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:HORVU3Hr1G020470	EnsemblPlants:HORVU3Hr1G020470.1	InterPro:IPR000608
InterPro:IPR016135	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898	PANTHER:PTHR43898:SF8
SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI000B476EDA
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:63800868..63807891

Molecular Weight (calculated)

25242.8 Da

IEP (calculated)

5.287

GRAVY (calculated)

-0.460

Length

227 amino acids

Sequence
(BLAST)

001: DQWLAVLSSL TFLDSPVQSF CPPLYIAPSP SPTCPSIAQA DLKPSTPSSP CSRTTSTREP TSPPPPPAAS QITLRMSTPS RKRLMRDFKR LMQDPPAGIS
101: GAPQDNNIML WNAVIFGPDD SPWDGGTFKL TLQFNEEYPN KPPTVRFISR MFHPNIYADG SICLDILQNQ WSPIYDVAAI LTSIQSLLCD PNPNSPANSE
201: AARMFSENKR EYNRKVREIV EQSWTAD

Best Arabidopsis Sequence Match ( AT2G02760.3 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD

Arabidopsis Description

UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.