Factsheet for Bra026833.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026582.1-P	Field mustard	mitochondrion, nucleus	98.68	98.68
Bra024808.1-P	Field mustard	mitochondrion, nucleus	98.68	98.68
Bra026222.1-P	Field mustard	mitochondrion, nucleus	98.03	98.03
Bra017410.1-P	Field mustard	mitochondrion, nucleus	98.03	98.03
Solyc02g087750.2.1	Tomato	mitochondrion, nucleus	95.39	95.39
Bra016264.1-P	Field mustard	mitochondrion	94.08	94.08
TraesCS3B01G131500.2	Wheat	nucleus	92.11	92.11
Solyc02g067420.2.1	Tomato	nucleus	90.13	90.13
PGSC0003DMT400017857	Potato	mitochondrion, nucleus	88.82	88.82
Bra016704.1-P	Field mustard	nucleus	88.82	88.82
Bra029252.1-P	Field mustard	mitochondrion, nucleus	85.53	86.67
TraesCS3A01G112600.1	Wheat	mitochondrion	92.11	86.42
TraesCS3D01G114600.3	Wheat	mitochondrion	92.11	86.42
KRG99148	Soybean	mitochondrion	71.05	82.44
PGSC0003DMT400003320	Potato	cytoskeleton, cytosol, nucleus	95.39	72.5
Bra016703.1-P	Field mustard	nucleus	100.0	72.38
HORVU3Hr1G020470.1	Barley	plastid	92.11	61.67
Bra027688.1-P	Field mustard	cytosol	33.55	45.95
Bra001347.1-P	Field mustard	cytosol	44.08	45.27
Bra041101.1-P	Field mustard	cytosol	44.08	45.27
Bra029076.1-P	Field mustard	cytosol	43.42	44.59
Bra003066.1-P	Field mustard	cytosol	43.42	44.59
Bra022645.1-P	Field mustard	cytosol	43.42	44.59
Bra035605.1-P	Field mustard	cytosol	42.76	43.92
Bra028946.1-P	Field mustard	cytosol	39.47	42.86
Bra002842.1-P	Field mustard	cytosol	40.13	41.22
Bra013049.1-P	Field mustard	cytosol	39.47	40.54
Bra027749.1-P	Field mustard	nucleus	38.82	38.82
Bra026700.1-P	Field mustard	cytosol	36.84	36.6
Bra026018.1-P	Field mustard	cytosol	36.84	36.6
Bra032244.1-P	Field mustard	cytosol	35.53	36.0
Bra016626.1-P	Field mustard	cytosol	36.18	35.95
Bra008383.1-P	Field mustard	cytosol	36.18	35.95
Bra035071.1-P	Field mustard	cytosol	31.58	34.53
Bra001995.1-P	Field mustard	cytosol	39.47	33.33
Bra027422.1-P	Field mustard	plastid	33.55	27.87
Bra029711.1-P	Field mustard	nucleus	44.08	21.61

Protein Annotations

MapMan:19.2.2.1.4	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra026833	EnsemblPlants:Bra026833.1	EnsemblPlants:Bra026833.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016740	InterPro:IPR000608
InterPro:IPR016135	UniProt:M4EDH3	PFAM:PF00179	ScanProsite:PS00183	PFscan:PS50127	PANTHER:PTHR43898
PANTHER:PTHR43898:SF5	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_AS	InterPro:UBQ-conjugating_enzyme/RWD
UniParc:UPI00000013FE	:	:	:	:	:

Description

AT1G14400 (E=5e-088) UBC1, ATUBC1 | UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase

Coordinates

chrA09:+:33915927..33916689

Molecular Weight (calculated)

17282.3 Da

IEP (calculated)

5.184

GRAVY (calculated)

-0.589

Length

152 amino acids

Sequence
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Best Arabidopsis Sequence Match ( AT1G14400.2 )
(BLAST)

001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMY SESKREYNRR VRDVVEQSWT AD

Arabidopsis Description

UBC1Ubiquitin-conjugating enzyme E2 1 [Source:UniProtKB/Swiss-Prot;Acc:P25865]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.