Factsheet for Bra027749.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027688.1-P	Field mustard	cytosol	64.47	88.29
Solyc03g007470.2.1	Tomato	cytosol	84.21	86.49
PGSC0003DMT400023419	Potato	cytosol	84.21	86.49
KRH18135	Soybean	cytosol	84.21	85.91
Bra003066.1-P	Field mustard	cytosol	83.55	85.81
KRH64511	Soybean	cytosol	83.55	85.81
KRH53428	Soybean	cytosol	83.55	85.81
KRH15985	Soybean	cytosol	82.89	85.14
GSMUA_Achr10P...	Banana	cytosol	82.89	85.14
Bra022645.1-P	Field mustard	cytosol	82.89	85.14
Bra029076.1-P	Field mustard	cytosol	82.89	85.14
GSMUA_Achr4P02490_001	Banana	cytosol	81.58	83.78
AT5G41700.4	Thale cress	cytosol, mitochondrion, peroxisome	81.58	83.22
CDY38184	Canola	cytosol	96.05	81.11
Bra001347.1-P	Field mustard	cytosol	78.95	81.08
Bra041101.1-P	Field mustard	cytosol	78.95	81.08
Bra035605.1-P	Field mustard	cytosol	76.32	78.38
Bra028946.1-P	Field mustard	cytosol	71.05	77.14
Bra002842.1-P	Field mustard	cytosol	74.34	76.35
Bra013049.1-P	Field mustard	cytosol	70.39	72.3
Bra001995.1-P	Field mustard	cytosol	69.08	58.33
Bra032244.1-P	Field mustard	cytosol	46.05	46.67
Bra026700.1-P	Field mustard	cytosol	42.11	41.83
Bra026018.1-P	Field mustard	cytosol	41.45	41.18
Bra008383.1-P	Field mustard	cytosol	41.45	41.18
Bra016626.1-P	Field mustard	cytosol	40.79	40.52
Bra035071.1-P	Field mustard	cytosol	36.84	40.29
Bra029252.1-P	Field mustard	mitochondrion, nucleus	39.47	40.0
Bra017410.1-P	Field mustard	mitochondrion, nucleus	38.82	38.82
Bra026833.1-P	Field mustard	mitochondrion, nucleus	38.82	38.82
Bra026222.1-P	Field mustard	mitochondrion, nucleus	38.82	38.82
Bra027422.1-P	Field mustard	plastid	46.05	38.25
Bra024808.1-P	Field mustard	mitochondrion, nucleus	38.16	38.16
Bra026582.1-P	Field mustard	mitochondrion, nucleus	38.16	38.16
Bra029711.1-P	Field mustard	nucleus	76.97	37.74
Bra016704.1-P	Field mustard	nucleus	37.5	37.5
Bra016264.1-P	Field mustard	mitochondrion	37.5	37.5
Bra016703.1-P	Field mustard	nucleus	38.82	28.1

Protein Annotations

EnsemblPlants:Bra027749.1	EnsemblPlants:Bra027749.1-P	EnsemblPlantsGene:Bra027749	Gene3D:3.10.110.10	InterPro:IPR000608	InterPro:IPR016135
InterPro:UBQ-conjugat_E2	InterPro:UBQ-conjugating_enzyme/RWD	PANTHER:PTHR24068	PANTHER:PTHR24068:SF78	PFAM:PF00179	PFscan:PS50127
SMART:SM00212	SUPFAM:SSF54495	UniParc:UPI0002542281	UniProt:M4EG36	MapMan:19.2.2.5.2	:

Description

AT1G64230 (E=3e-073) UBC28 | ubiquitin-conjugating enzyme, putative

Coordinates

chrA09:+:6480422..6481443

Molecular Weight (calculated)

17243.7 Da

IEP (calculated)

8.669

GRAVY (calculated)

-0.341

Length

152 amino acids

Sequence
(BLAST)

001: MASKRILKEL KDLQKDPSTL YTAGPVAEDL FHWQATITGP SDSPYSGGVF ILTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGIICFNICH DVLKEQWSPA
101: LTISKVLFSI WSLLRDPNAD DPMVPEIAHM YKTDRGKYES NARSWTQKYA MG

Best Arabidopsis Sequence Match ( AT1G64230.1 )
(BLAST)

001: MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP SDSPYSGGVF LVTIHFPPDY PFKPPKVAFR TKVFHPNVNS NGSICLDILK EQWSPALTIS
101: KVLLSICSLL TDPNPDDPLV PEIAHMYKTD RAKYESTARS WTQKYAMG

Arabidopsis Description

UBC28Ubiquitin-conjugating enzyme 28 [Source:UniProtKB/TrEMBL;Acc:F4I5B8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.