Factsheet for Bra027422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000702.1-P
Bra005541.1-P
Bra006246.1-P
Bra006326.1-P
Bra017569.1-P
Bra022023.1-P
Bra023453.1-P
Bra025031.1-P
Bra029577.1-P
Bra032760.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13550.1	Bra005541.1-P	AT2G32950.1	11877375
AT3G13550.1	Bra005541.1-P	AT2G32950.1	18552200
AT3G13550.1	Bra029577.1-P	AT4G05420.1	16844902
AT3G13550.1	Bra029577.1-P	AT4G05420.1	18552200
AT3G13550.1	Bra000702.1-P	AT4G10180.1	16844902
AT3G13550.1	Bra000702.1-P	AT4G10180.1	18552200
AT3G13550.1	Bra032760.1-P	AT4G14110.1	11877375
AT3G13550.1	Bra038444.1-P	AT4G14110.1	11877375
AT3G13550.1	Bra006246.1-P	AT5G14250.1	11877375
AT3G13550.1	Bra006326.1-P	AT5G14250.1	11877375
AT3G13550.1	Bra023453.1-P	AT5G14250.1	11877375
AT3G13550.1	Bra033654.1-P	AT5G42970.1	11877375
AT3G13550.1	Bra035336.1-P	AT5G42970.1	11877375
AT3G13550.1	Bra017569.1-P	AT5G46210.1	16844902
AT3G13550.1	Bra022023.1-P	AT5G46210.1	16844902
AT3G13550.1	Bra025031.1-P	AT5G46210.1	16844902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59253	Canola	mitochondrion	98.91	98.91
CDY23617	Canola	plastid	98.36	98.36
AT3G13550.1	Thale cress	mitochondrion	92.35	92.86
VIT_06s0004g00730.t01	Wine grape	plastid	68.31	71.02
GSMUA_Achr4P22180_001	Banana	cytosol	52.46	69.06
KRH42820	Soybean	plastid	65.03	67.61
Solyc01g005840.2.1	Tomato	plastid	62.3	62.98
TraesCS2A01G187000.1	Wheat	plastid	60.11	57.89
TraesCS2B01G220200.1	Wheat	plastid	59.02	56.25
Zm00001d021904_P001	Maize	plastid	54.64	54.35
EER97436	Sorghum	plastid	55.19	54.01
Os07t0577400-01	Rice	nucleus	59.56	53.96
Bra013049.1-P	Field mustard	cytosol	40.44	50.0
Bra002842.1-P	Field mustard	cytosol	39.34	48.65
Bra028946.1-P	Field mustard	cytosol	37.16	48.57
Bra001347.1-P	Field mustard	cytosol	38.8	47.97
Bra041101.1-P	Field mustard	cytosol	38.8	47.97
Bra035605.1-P	Field mustard	cytosol	38.8	47.97
Bra027688.1-P	Field mustard	cytosol	28.96	47.75
Bra003066.1-P	Field mustard	cytosol	37.7	46.62
Bra027749.1-P	Field mustard	nucleus	38.25	46.05
Bra029076.1-P	Field mustard	cytosol	37.16	45.95
Bra022645.1-P	Field mustard	cytosol	37.16	45.95
Bra032244.1-P	Field mustard	cytosol	31.69	38.67
Bra026700.1-P	Field mustard	cytosol	32.24	38.56
Bra001995.1-P	Field mustard	cytosol	37.7	38.33
Bra026018.1-P	Field mustard	cytosol	31.69	37.91
Bra008383.1-P	Field mustard	cytosol	31.69	37.91
Bra016626.1-P	Field mustard	cytosol	31.15	37.25
Bra035071.1-P	Field mustard	cytosol	27.32	35.97
Bra026222.1-P	Field mustard	mitochondrion, nucleus	27.87	33.55
Bra017410.1-P	Field mustard	mitochondrion, nucleus	27.87	33.55
Bra016264.1-P	Field mustard	mitochondrion	27.87	33.55
Bra026833.1-P	Field mustard	mitochondrion, nucleus	27.87	33.55
Bra026582.1-P	Field mustard	mitochondrion, nucleus	27.32	32.89
Bra024808.1-P	Field mustard	mitochondrion, nucleus	27.32	32.89
Bra029252.1-P	Field mustard	mitochondrion, nucleus	25.68	31.33
Bra016704.1-P	Field mustard	nucleus	25.14	30.26
Bra016703.1-P	Field mustard	nucleus	27.87	24.29
Bra029711.1-P	Field mustard	nucleus	38.25	22.58

Protein Annotations

MapMan:19.2.2.8.3.3.1	Gene3D:3.10.110.10	EnsemblPlantsGene:Bra027422	EnsemblPlants:Bra027422.1	EnsemblPlants:Bra027422.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009628
GO:GO:0009791	GO:GO:0010099	InterPro:IPR000608	InterPro:IPR016135	UniProt:M4EF60	PFAM:PF00179
PFscan:PS50127	PANTHER:PTHR24068	PANTHER:PTHR24068:SF41	SMART:SM00212	SUPFAM:SSF54495	InterPro:UBQ-conjugat_E2
InterPro:UBQ-conjugating_enzyme/RWD	UniParc:UPI0002547FA2	:	:	:	:

Description

AT3G13550 (E=2e-099) FUS9, EMB144, COP10, CIN4 | FUS9 (FUSCA 9); protein binding / ubiquitin-protein ligase

Coordinates

chrA05:+:20822260..20823436

Molecular Weight (calculated)

20287.4 Da

IEP (calculated)

9.294

GRAVY (calculated)

-0.214

Length

183 amino acids

Sequence
(BLAST)

001: MMTTPGGSGR FKPLPTAMYA GYSGTASSWV AKTSVSASGK RIQREMAELN VDPPPECSAG PKGDNLYHWI ATIIGPSGTP YEGGIFFLDM IFPSDYPFKP
101: PKVVFKTRIY HCNVDTAGNL SVEILRDSWS PALTITKVLQ AIRSIFLKPE TYNPALPVIA RLYLSDREKH EEVAKEWTLR FAK

Best Arabidopsis Sequence Match ( AT3G13550.1 )
(BLAST)

001: MMTPGGSGRL RPLPTAMYAG YSGTASSWVA KTSVSASGKR IQREMAELNI DPPPDCSAGP KGDNLYHWIA TIIGPSGTPY EGGIFFLDII FPSDYPFKPP
101: KLVFKTRIYH CNVDTAGDLS VNILRDSWSP ALTITKVLQA IRSIFLKPEP YSPALPVIAR LYLTDREKHD EVAKEWTLRF AK

Arabidopsis Description

COP10FUS9 [Source:UniProtKB/TrEMBL;Acc:A0A178VI85]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.