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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000529.1-P
Bra002827.1-P
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007576.1-P
Bra012038.1-P
Bra012303.1-P
Bra012351.1-P
Bra017569.1-P
Bra022023.1-P
Bra023453.1-P
Bra024548.1-P
Bra025031.1-P
Bra027422.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G14250.1 Bra012303.1-P AT1G02090.1 12615944
AT5G14250.1 Bra032666.1-P AT1G02090.1 12615944
AT5G14250.1 Bra033219.1-P AT1G02090.1 12615944
AT5G14250.1 Bra012303.1-P AT1G02090.1 15703063
AT5G14250.1 Bra032666.1-P AT1G02090.1 15703063
AT5G14250.1 Bra033219.1-P AT1G02090.1 15703063
AT5G14250.1 Bra012351.1-P AT1G22920.1 11742986
AT5G14250.1 Bra024548.1-P AT1G22920.1 11742986
AT5G14250.1 Bra012351.1-P AT1G22920.1 15703063
AT5G14250.1 Bra024548.1-P AT1G22920.1 15703063
AT5G14250.1 Bra000529.1-P AT2G26990.1 12615944
AT5G14250.1 Bra012038.1-P AT2G26990.1 12615944
AT5G14250.1 Bra000529.1-P AT2G26990.1 15703063
AT5G14250.1 Bra012038.1-P AT2G26990.1 15703063
AT5G14250.1 Bra027422.1-P AT3G13550.1 11877375
AT5G14250.1 Bra003438.1-P AT3G61140.1 12615944
AT5G14250.1 Bra007576.1-P AT3G61140.1 12615944
AT5G14250.1 Bra003438.1-P AT3G61140.1 15703063
AT5G14250.1 Bra007576.1-P AT3G61140.1 15703063
AT5G14250.1 Bra032760.1-P AT4G14110.1 11742986
AT5G14250.1 Bra038444.1-P AT4G14110.1 11742986
AT5G14250.1 Bra032760.1-P AT4G14110.1 12615944
AT5G14250.1 Bra038444.1-P AT4G14110.1 12615944
AT5G14250.1 Bra032760.1-P AT4G14110.1 15703063
AT5G14250.1 Bra038444.1-P AT4G14110.1 15703063
AT5G14250.1 Bra006246.1-P AT5G14250.1 12615944
AT5G14250.1 Bra006326.1-P AT5G14250.1 12615944
AT5G14250.1 Bra023453.1-P AT5G14250.1 12615944
AT5G14250.1 Bra033654.1-P AT5G42970.1 11742986
AT5G14250.1 Bra035336.1-P AT5G42970.1 11742986
AT5G14250.1 Bra033654.1-P AT5G42970.1 12615944
AT5G14250.1 Bra035336.1-P AT5G42970.1 12615944
AT5G14250.1 Bra033654.1-P AT5G42970.1 15703063
AT5G14250.1 Bra035336.1-P AT5G42970.1 15703063
AT5G14250.1 Bra017569.1-P AT5G46210.1 16844902
AT5G14250.1 Bra022023.1-P AT5G46210.1 16844902
AT5G14250.1 Bra025031.1-P AT5G46210.1 16844902
AT5G14250.1 Bra002827.1-P AT5G56280.1 11701877
AT5G14250.1 Bra002827.1-P AT5G56280.1 12615944
AT5G14250.1 Bra002827.1-P AT5G56280.1 15703063
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX78568 Canola cytosol 98.1 98.1
Bra023453.1-P Field mustard cytosol 85.51 84.71
AT5G14250.1 Thale cress cytosol 80.52 79.02
Bra006326.1-P Field mustard endoplasmic reticulum, mitochondrion, plasma membrane, plastid 44.42 74.8
VIT_14s0171g00270.t01 Wine grape cytosol 64.61 64.15
KRH57651 Soybean cytosol 64.37 64.07
KRG94317 Soybean cytosol 62.95 62.65
Solyc02g093920.2.1 Tomato cytosol 62.47 61.45
PGSC0003DMT400052100 Potato cytosol 62.23 61.22
GSMUA_Achr11P... Banana cytosol 57.96 57.82
GSMUA_AchrUn_... Banana cytosol 54.16 55.61
Os08t0119000-01 Rice cytosol 56.06 55.4
EES13281 Sorghum cytosol 56.29 55.24
Zm00001d049652_P001 Maize cytosol 53.44 52.94
TraesCS7B01G216600.2 Wheat cytosol 52.97 52.22
TraesCS7D01G312600.2 Wheat cytosol 52.73 51.99
Zm00001d035130_P001 Maize cytosol 56.06 50.64
TraesCS7A01G315600.1 Wheat cytosol 49.64 49.18
Zm00001d028517_P001 Maize cytosol 12.35 47.27
HORVU7Hr1G075150.4 Barley mitochondrion 52.49 45.38
Protein Annotations
Gene3D:1.25.40.570MapMan:19.2.3.3.1.3EnsemblPlantsGene:Bra006246EnsemblPlants:Bra006246.1EnsemblPlants:Bra006246.1-PInterPro:CSN3
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0008180InterPro:IPR000717
UniProt:M4CPV7InterPro:PCI_domPFAM:PF01399PFscan:PS50250PANTHER:PTHR10758PANTHER:PTHR10758:SF1
SMART:SM00088SMART:SM00753SUPFAM:SSF46785UniParc:UPI000253FB45InterPro:WH_DNA-bd_sfSEG:seg
Description
AT5G14250 (E=2e-184) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding
Coordinates
chrA03:+:2679131..2681461
Molecular Weight (calculated)
47218.6 Da
IEP (calculated)
7.102
GRAVY (calculated)
0.021
Length
421 amino acids
Sequence
(BLAST)
001: MSTVEAVVTS IQGLSASSSD LYALHDLLKG AVDSLRTDSE LQLSTLDQLD PSKHSLGYLY LLDVLAYGPV SKEKVLLIAR FINACDAVQI RLASEKFVSL
101: CKRFKDKVLE LRDPLLGVAP LLAAVHKVQV STKRLTALHP DCLQLCLLAK CYKAGFSVLS DDILEVDQPR EFYLYCYYGG MICIGLKRFQ KALELLYNVV
201: TAPMHIVNAI ALEAYKKYIL VTLIHSGQFS ISLPKCASTT AKSSFKTWCT PYIEVGMRYN DGKISELEAV VVANSSDFEK DNNLGLVKQA VASLYKRNIL
301: RLTQKYLTLS LQDIANMVQL ANAKEAEMRV LQMIQDGQIH ALINQKDGMV RFLEDPEQYK TSEMREIMDS VIQRTIGLSK NLIAMDESLS CDPLYLGKVG
401: RERQRYDFGE DFDTVPQKFS M
Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.