Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78568 | Canola | cytosol | 79.49 | 81.0 |
| Bra006246.1-P | Field mustard | cytosol | 79.02 | 80.52 |
| CDX85608 | Canola | cytosol | 79.02 | 79.76 |
| CDX91076 | Canola | cytosol | 79.02 | 79.58 |
| Bra023453.1-P | Field mustard | cytosol | 78.32 | 79.06 |
| Bra006326.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 40.56 | 69.6 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 40.33 | 68.92 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 65.5 | 66.27 |
| CDX70553 | Canola | mitochondrion | 55.24 | 64.93 |
| KRH57651 | Soybean | cytosol | 63.87 | 64.78 |
| KRG94317 | Soybean | cytosol | 62.0 | 62.88 |
| Solyc02g093920.2.1 | Tomato | cytosol | 61.07 | 61.22 |
| PGSC0003DMT400052100 | Potato | cytosol | 60.84 | 60.98 |
| GSMUA_Achr11P... | Banana | cytosol | 57.34 | 58.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 55.48 | 58.05 |
| EES13281 | Sorghum | cytosol | 55.48 | 55.48 |
| Os08t0119000-01 | Rice | cytosol | 54.78 | 55.16 |
| Zm00001d049652_P001 | Maize | cytosol | 53.38 | 53.88 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 51.52 | 51.76 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 51.52 | 51.76 |
| Zm00001d035130_P001 | Maize | cytosol | 55.24 | 50.86 |
| Zm00001d028517_P001 | Maize | cytosol | 12.82 | 50.0 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 48.95 | 49.41 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 50.82 | 44.76 |
| CDY26433 | Canola | mitochondrion | 42.42 | 41.36 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | EntrezGene:831275 | UniProt:A0A178UB34 | ProteinID:AAK61872.1 | ProteinID:AED92005.1 |
| EMBL:AF361760 | EMBL:AF395059 | EMBL:AF419585 | ArrayExpress:AT5G14250 | EnsemblPlantsGene:AT5G14250 | RefSeq:AT5G14250 |
| TAIR:AT5G14250 | RefSeq:AT5G14250-TAIR-G | EnsemblPlants:AT5G14250.1 | TAIR:AT5G14250.1 | EMBL:AY084910 | EMBL:AY113041 |
| Unigene:At.5163 | ProteinID:CAB87764.1 | Symbol:COP13 | InterPro:CSN3 | GO:GO:0000338 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007049 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009056 |
| GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010017 | GO:GO:0010971 |
| GO:GO:0019538 | InterPro:IPR000717 | RefSeq:NP_568296.1 | ProteinID:OAO90880.1 | InterPro:PCI_dom | PFAM:PF01399 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 | UniProt:Q8W575 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI000005ECAA | InterPro:WH_DNA-bd_sf | : | : | : |
Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
Coordinates
chr5:+:4597868..4600835
Molecular Weight (calculated)
47743.8 Da
IEP (calculated)
6.319
GRAVY (calculated)
-0.061
Length
429 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.