Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85608 | Canola | cytosol | 95.77 | 96.0 |
| CDX78568 | Canola | cytosol | 86.85 | 87.89 |
| AT5G14250.1 | Thale cress | cytosol | 79.58 | 79.02 |
| CDX78656 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 40.61 | 68.92 |
| CDX70553 | Canola | mitochondrion | 58.22 | 67.95 |
| VIT_14s0171g00270.t01 | Wine grape | cytosol | 66.43 | 66.75 |
| KRH57651 | Soybean | cytosol | 64.55 | 65.01 |
| KRG94317 | Soybean | cytosol | 63.62 | 64.07 |
| Solyc02g093920.2.1 | Tomato | cytosol | 63.85 | 63.55 |
| PGSC0003DMT400052100 | Potato | cytosol | 63.62 | 63.32 |
| GSMUA_Achr11P... | Banana | cytosol | 57.04 | 57.58 |
| Os08t0119000-01 | Rice | cytosol | 55.87 | 55.87 |
| GSMUA_AchrUn_... | Banana | cytosol | 53.52 | 55.61 |
| EES13281 | Sorghum | cytosol | 55.63 | 55.24 |
| TraesCS7B01G216600.2 | Wheat | cytosol | 53.76 | 53.63 |
| TraesCS7D01G312600.2 | Wheat | cytosol | 53.76 | 53.63 |
| Zm00001d049652_P001 | Maize | cytosol | 52.58 | 52.71 |
| TraesCS7A01G315600.1 | Wheat | cytosol | 50.47 | 50.59 |
| Zm00001d035130_P001 | Maize | cytosol | 55.16 | 50.43 |
| HORVU7Hr1G075150.4 | Barley | mitochondrion | 53.29 | 46.61 |
| CDY26433 | Canola | mitochondrion | 46.95 | 45.45 |
| Zm00001d028517_P001 | Maize | cytosol | 11.74 | 45.45 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.3.3.1.3 | EnsemblPlants:CDX91076 | ProteinID:CDX91076 | ProteinID:CDX91076.1 | InterPro:CSN3 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008180 | EnsemblPlantsGene:GSBRNA2T00151849001 |
| InterPro:IPR000717 | InterPro:PCI_dom | PFAM:PF01399 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF1 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0004EEB901 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
BnaC02g05210D
Coordinates
chrLK031865:-:646430..649374
Molecular Weight (calculated)
47646.8 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.078
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTENLITS IQGLSASSGD LSALHRILKG AEETLHADSD LQLSTLEQLD PSKHSLGYLY LLDVLTCGGP MSKEKASEVV LLIARFITSC DAEQIRLASD
101: KFVSLCKGFK DRVLELEDPL RGVAPLLTAV RKVQVSTKRL TALHPDCLQL CLQAKCYKAG FSILSDDILE VDQPRDFYLY CYYGGMICIG QKKFQKALEL
201: LYNVVTAPMH SVNAIALEAY KKYVLVTLIH SGQFSVSLPK CASTAAQRHL KTWSIPYTEV GNCYNEGKIS ELQAVVVAHS SDFEKDNNLG LVKQAVSSLY
301: KRNILRLTQK YLTLSLQDIA NMVQLANAKE AEMHVLQMIQ DGQIHALINQ KDGMVRFLED PEQYKTSEMI EVMDSVIQRT IMLSKNLIAM DESLSCDPLY
401: LGKVGRERQR YDFGEDFDTV PQKFSM
101: KFVSLCKGFK DRVLELEDPL RGVAPLLTAV RKVQVSTKRL TALHPDCLQL CLQAKCYKAG FSILSDDILE VDQPRDFYLY CYYGGMICIG QKKFQKALEL
201: LYNVVTAPMH SVNAIALEAY KKYVLVTLIH SGQFSVSLPK CASTAAQRHL KTWSIPYTEV GNCYNEGKIS ELQAVVVAHS SDFEKDNNLG LVKQAVSSLY
301: KRNILRLTQK YLTLSLQDIA NMVQLANAKE AEMHVLQMIQ DGQIHALINQ KDGMVRFLED PEQYKTSEMI EVMDSVIQRT IMLSKNLIAM DESLSCDPLY
401: LGKVGRERQR YDFGEDFDTV PQKFSM
001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM
Arabidopsis Description
CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.