CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70553
CDX71533
CDX72295
CDX76416
CDX78568
CDX78656
CDX84902
CDX85608
CDX90556
CDX91076
CDY01192
CDY02426
CDY02834
CDY03047
CDY03208
CDY09359
CDY09730
CDY12145
CDY12369
CDY12734
CDY13413
CDY22374
CDY23283
CDY23617
CDY26433
CDY27125
CDY27634
CDY32686
CDY36454
CDY41685
CDY45206
CDY52540
CDY57060
CDY59253
CDY61016
CDY68484
CDY69266
CDY69930
CDY70585

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46210.1	CDX84902	AT1G19750.1	20622147
AT5G46210.1	CDY27634	AT1G19750.1	20622147
AT5G46210.1	CDY03047	AT2G02560.1	16844902
AT5G46210.1	CDY09359	AT2G02560.1	16844902
AT5G46210.1	CDY41685	AT2G02560.1	16844902
AT5G46210.1	CDY45206	AT2G02560.1	16844902
AT5G46210.1	CDY12145	AT2G32950.1	16844902
AT5G46210.1	CDY52540	AT2G32950.1	16844902
AT5G46210.1	CDY23617	AT3G13550.1	16844902
AT5G46210.1	CDY59253	AT3G13550.1	16844902
AT5G46210.1	CDY68484	AT4G05420.1	16792691
AT5G46210.1	CDY69266	AT4G05420.1	16792691
AT5G46210.1	CDY69930	AT4G05420.1	16792691
AT5G46210.1	CDY70585	AT4G05420.1	16792691
AT5G46210.1	CDY68484	AT4G05420.1	16844902
AT5G46210.1	CDY69266	AT4G05420.1	16844902
AT5G46210.1	CDY69930	AT4G05420.1	16844902
AT5G46210.1	CDY70585	AT4G05420.1	16844902
AT5G46210.1	CDY68484	AT4G05420.1	18223036
AT5G46210.1	CDY69266	AT4G05420.1	18223036
AT5G46210.1	CDY69930	AT4G05420.1	18223036
AT5G46210.1	CDY70585	AT4G05420.1	18223036
AT5G46210.1	CDY68484	AT4G05420.1	18551167
AT5G46210.1	CDY69266	AT4G05420.1	18551167
AT5G46210.1	CDY69930	AT4G05420.1	18551167
AT5G46210.1	CDY70585	AT4G05420.1	18551167
AT5G46210.1	CDY01192	AT4G14110.1	16844902
AT5G46210.1	CDY12369	AT4G14110.1	16844902
AT5G46210.1	CDY12734	AT4G14110.1	16844902
AT5G46210.1	CDY27125	AT4G14110.1	16844902
AT5G46210.1	CDX90556	AT4G15900.1	18223036
AT5G46210.1	CDY09730	AT4G15900.1	18223036
AT5G46210.1	CDX76416	AT4G21100.1	16792691
AT5G46210.1	CDY57060	AT4G21100.1	16792691
AT5G46210.1	CDX72295	AT4G31160.1	18552200
AT5G46210.1	CDY03208	AT4G31160.1	18552200
AT5G46210.1	CDY13413	AT4G31160.1	18552200
AT5G46210.1	CDY23283	AT4G31160.1	18552200
AT5G46210.1	CDY36454	AT4G31160.1	18552200
AT5G46210.1	CDX70553	AT5G14250.1	16844902
AT5G46210.1	CDX78568	AT5G14250.1	16844902
AT5G46210.1	CDX78656	AT5G14250.1	16844902
AT5G46210.1	CDX85608	AT5G14250.1	16844902
AT5G46210.1	CDX91076	AT5G14250.1	16844902
AT5G46210.1	CDY26433	AT5G14250.1	16844902
AT5G46210.1	CDX71533	AT5G42970.1	16844902
AT5G46210.1	CDY02426	AT5G42970.1	16844902
AT5G46210.1	CDY22374	AT5G42970.1	16844902
AT5G46210.1	CDY61016	AT5G42970.1	16844902
AT5G46210.1	CDY02834	AT5G58760.1	18551167
AT5G46210.1	CDY32686	AT5G58760.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33461	Canola	cytosol	97.52	98.29
Bra025031.1-P	Field mustard	cytosol	96.61	97.5
KRH21073	Soybean	cytosol	34.94	93.71
CDY43957	Canola	cytosol	94.39	93.3
CDX87735	Canola	cytosol	94.26	92.69
CDY03235	Canola	plastid	94.65	91.9
CDY35152	Canola	plastid	93.74	91.48
AT5G46210.1	Thale cress	cytosol	91.13	88.26
KRH11182	Soybean	cytosol, plastid	83.7	81.47
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	83.31	81.4
KRH58640	Soybean	cytosol	82.14	81.29
VIT_10s0003g03710.t01	Wine grape	cytosol	84.62	80.92
KRH42547	Soybean	cytosol	80.83	80.62
TraesCS5A01G425300.1	Wheat	cytosol	74.19	80.03
GSMUA_Achr4P22850_001	Banana	cytosol	80.7	77.09
Solyc02g070460.2.1	Tomato	plastid	80.05	76.56
TraesCS5B01G427400.1	Wheat	cytosol	77.71	74.22
KRH21072	Soybean	plastid	45.63	72.46
EER93338	Sorghum	plastid	78.75	72.42
Zm00001d034361_P001	Maize	cytosol, plastid	78.36	72.24
TraesCS5D01G433700.3	Wheat	cytosol, plastid	77.58	71.69
HORVU5Hr1G103580.2	Barley	plastid	77.84	71.67
GSMUA_Achr7P01270_001	Banana	cytosol	80.18	70.29
Zm00001d013116_P002	Maize	plastid	78.49	70.0
CDY46437	Canola	cytosol	39.11	40.98
CDY45004	Canola	cytosol	38.98	40.85
CDY50732	Canola	cytosol	38.85	40.71
CDY16196	Canola	cytosol	38.85	40.71
CDY72590	Canola	cytosol	4.69	38.3
CDY51862	Canola	cytosol	12.91	34.26
CDX93643	Canola	cytosol	21.12	32.08
CDY22060	Canola	cytosol	30.64	31.84
CDY21896	Canola	cytosol	30.51	31.71
CDY18013	Canola	cytosol	30.51	31.71
CDX90932	Canola	cytosol	30.38	31.57
CDY32488	Canola	cytosol	29.6	30.76
CDX89925	Canola	cytosol	28.81	30.32
CDX89926	Canola	cytosol	27.9	29.76
CDY51951	Canola	cytosol	28.42	29.58
CDX67439	Canola	cytosol	26.6	29.02
CDY11663	Canola	cytosol	26.47	28.88
CDY51863	Canola	cytosol	11.73	20.83
CDX91291	Canola	nucleus	3.13	19.67
CDY21897	Canola	mitochondrion	6.52	19.61
CDY22061	Canola	mitochondrion	6.52	19.61
CDY18137	Canola	cytosol	27.64	14.45
CDY37452	Canola	cytosol	2.22	12.98

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.3.1	MapMan:26.1.1.3.1	GO:A0A078CNQ9
EnsemblPlants:CDX77644	ProteinID:CDX77644	ProteinID:CDX77644.1	ncoils:Coil	InterPro:Cullin_CS	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
EnsemblPlantsGene:GSBRNA2T00128584001	InterPro:IPR016158	InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	ScanProsite:PS01256
PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF27	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785
SUPFAM:SSF74788	SUPFAM:SSF75632	UniPathway:UPA00143	UniParc:UPI0004EDBAC5	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf

Description

BnaC07g18980D

Coordinates

chrLK031812:-:394806..399981

Molecular Weight (calculated)

88696.2 Da

IEP (calculated)

8.134

GRAVY (calculated)

-0.424

Length

767 amino acids

Sequence
(BLAST)

001: MKKAKNGLHA PSSQPNASDK AVFSMEEDPA PSAAANLSRK KATLPQPTKK LVIKLNKAKP SLPTNFEDTT WENLQSAIRA IFLKQPFPFD LERLYQAVGD
101: LCLHKLEGKL YERIEKECEE HISAALESLV GQDTDLSVFL SLVEKCWQDF CDQMLMIRSI ALSLDRKYVI QHTNVRSLWE MGLQLFRKHL SLSPDVEQRT
201: VTALLRMIGR ERLAEAVNRT LLSHLLKMFT ALGIYAESFE KQFLECTSEF YAAEGMKYMQ QYDVPEYLKH VEGRLHEENE RCILYIDAST RKPLISAVEK
301: QLLERHIHAV LDKGFTPLMD GRRTEDLQRM YTLFSRVNAL ESLRQALSSY IRKTGQKIVM DEEKDKDMVQ SLLDFKASLD IVWEESFYKN ESFGNTIKDS
401: FEHLINLRQN RPAELIAKFL DEKLRAGNKG TSEEELESIL EKVLVLFRFI QGKDVFEAFY KKDLAKRLLL GKSASIDAEK SMISKLKTEC GSQFTNKLEG
501: MFKDIELSKE INESFKQSSQ ARTKLPSGIE MSVHVLTTGY WPTYPHMDVK LPHELNVYQD IFKEFYLSKY SGRRLMWQNS LGHCVLKADF SKGKKELAVS
601: LFQAVVLMLF NDAMKLSFED IKDSTGIEDK ELRRTLQSLA CGKVRVLQKY PKGRDVQDGD EFDFNDTFTA PLYRIKVNAI QMKETVEENT STTERVFQDR
701: QYQIDAAIIR IMKTRKVLSH TLLITELFQQ LKFPIKPADL KKRIESLIDR EYLERDKSNP QIYNYLA

Best Arabidopsis Sequence Match ( AT5G46210.1 )
(BLAST)

001: MSLPTKRSTF SAASASDDSS YSSPPMKKAK NDLHHSPQHP NTADKVVGFH MEEDPTPAAA NLSRKKATLP QPTKKFVIKL NKAKPTLPTN FEENTWEKLQ
101: SAIRAIFLKK KISFDLESLY QAVDNLCLHK LDGKLYDQIE KECEEHISAA LQSLVGQNTD LTVFLSRVEK CWQDFCDQML MIRSIALTLD RKYVIQNPNV
201: RSLWEMGLQL FRKHLSLAPE VEQRTVKGLL SMIEKERLAE AVNRTLLSHL LKMFTALGIY MESFEKPFLE GTSEFYAAEG MKYMQQSDVP EYLKHVEGRL
301: HEENERCILY IDAVTRKPLI TTVERQLLER HILVVLEKGF TTLMDGRRTE DLQRMQTLFS RVNALESLRQ ALSSYVRKTG QKIVMDEEKD KDMVQSLLDF
401: KASLDIIWEE SFYKNESFGN TIKDSFEHLI NLRQNRPAEL IAKFLDEKLR AGNKGTSEEE LESVLEKVLV LFRFIQGKDV FEAFYKKDLA KRLLLGKSAS
501: IDAEKSMISK LKTECGSQFT NKLEGMFKDI ELSKEINESF KQSSQARTKL PSGIEMSVHV LTTGYWPTYP PMDVKLPHEL NVYQDIFKEF YLSKYSGRRL
601: MWQNSLGHCV LKADFSKGKK ELAVSLFQAV VLMLFNDAMK LSFEDIKDST SIEDKELRRT LQSLACGKVR VLQKNPKGRD VEDGDEFEFN DEFAAPLYRI
701: KVNAIQMKET VEENTSTTER VFQDRQYQID AAIVRIMKTR KVLSHTLLIT ELFQQLKFPI KPADLKKRIE SLIDREYLER EKSNPQIYNY LA

Arabidopsis Description

CUL4Cullin-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.