CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21897	Canola	mitochondrion	99.22	99.22
CDX91291	Canola	nucleus	5.49	11.48
CDY37452	Canola	cytosol	5.49	10.69
CDY22060	Canola	cytosol	24.71	8.54
CDY21896	Canola	cytosol	24.71	8.54
CDX90932	Canola	cytosol	24.71	8.54
CDY18013	Canola	cytosol	24.71	8.54
CDY72590	Canola	cytosol	3.14	8.51
CDY32488	Canola	cytosol	23.14	7.99
CDY51863	Canola	cytosol	13.33	7.87
CDY51951	Canola	cytosol	22.75	7.87
CDX67439	Canola	cytosol	21.57	7.82
CDX89926	Canola	cytosol	21.96	7.79
CDY16196	Canola	cytosol	22.35	7.79
CDY50732	Canola	cytosol	22.35	7.79
CDY46437	Canola	cytosol	22.35	7.79
CDY45004	Canola	cytosol	22.35	7.79
CDX93643	Canola	cytosol	15.29	7.72
CDY11663	Canola	cytosol	21.18	7.68
CDX89925	Canola	cytosol	20.0	7.0
CDY51862	Canola	cytosol	7.84	6.92
CDY33461	Canola	cytosol	20.0	6.7
CDX77644	Canola	cytosol	19.61	6.52
CDY35152	Canola	plastid	19.61	6.36
CDY03235	Canola	plastid	19.61	6.33
CDY43957	Canola	cytosol	19.22	6.31
CDX87735	Canola	cytosol	19.22	6.28
CDY18137	Canola	cytosol	21.57	3.75

Protein Annotations

Gene3D:1.10.10.1590	MapMan:2.4.1.1.2	Gene3D:3.40.30.10	GO:A0A078G9K3	UniProt:A0A078G9K3	EnsemblPlants:CDY22061
ProteinID:CDY22061	ProteinID:CDY22061.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00018442001	InterPro:NuoE-like	PFAM:PF01257	PIRSF:PIRSF000216	ScanProsite:PS01099	PANTHER:PTHR10371
PANTHER:PTHR10371:SF9	SUPFAM:SSF52833	TIGRFAMs:TIGR01958	InterPro:Thioredoxin-like_sf	UniParc:UPI0004EE81D6	:

Description

BnaA09g00900DBnaA09g00900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9K3]

Coordinates

chrLK032127:+:394989..397412

Molecular Weight (calculated)

28377.1 Da

IEP (calculated)

8.261

GRAVY (calculated)

-0.383

Length

255 amino acids

Sequence
(BLAST)

001: MLGRLAAKRL LEIRQVFRQS PSQASRSFST ALNYHLDSPD NKPDLPWEFS EANKSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQHGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Best Arabidopsis Sequence Match ( AT4G02580.1 )
(BLAST)

001: MLARLAAKRL LEIRQVFRQP TSQVTRSLST ALNYHLDSPD NKPDLPWEFS EANQSKVKEI LSYYPSNYKQ SAVIPLLDLA QQQNGGWLPV SAMNAVAKVI
101: EVAPIRVYEV ATFYSMFNRA KVGKYHLLVC GTTPCMIRGS RDIESALLDH LGVKRGEVTK DGLFSVGEME CMGCCVNAPM ITVADYSNGS EGYTYNYFED
201: VTPEKVVEIV EKLRKGEKPP HGTQNPKRIK CGPEGGNKTL LGEPKPPQFR DLDAC

Arabidopsis Description

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22769]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.