CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032576.1-P	Field mustard	cytosol	98.51	98.51
CDY51951	Canola	cytosol	87.13	87.25
CDY37452	Canola	cytosol	14.91	83.97
PGSC0003DMT400013645	Potato	cytosol	8.27	78.21
CDY51863	Canola	cytosol	43.09	73.61
CDY51862	Canola	cytosol	28.32	72.32
CDX89926	Canola	cytosol	68.7	70.51
CDX90932	Canola	cytosol	69.92	69.92
CDY18013	Canola	cytosol	69.92	69.92
CDY22060	Canola	cytosol	69.78	69.78
CDY21896	Canola	cytosol	69.65	69.65
CDY72590	Canola	cytosol	8.67	68.09
CDX89925	Canola	cytosol	66.53	67.35
AT1G43140.1	Thale cress	cytosol	64.91	66.44
AT1G02980.1	Thale cress	cytosol	66.26	65.9
CDX67439	Canola	cytosol	54.88	57.61
CDX93643	Canola	cytosol	39.16	57.23
CDY11663	Canola	cytosol	54.06	56.76
Solyc06g008710.1.1	Tomato	cytosol	54.47	54.1
CDX91291	Canola	nucleus	8.94	54.1
CDY18137	Canola	cytosol	69.51	34.97
CDY50732	Canola	cytosol	32.79	33.06
CDY16196	Canola	cytosol	32.79	33.06
CDY45004	Canola	cytosol	32.66	32.92
CDY46437	Canola	cytosol	32.52	32.79
CDY33461	Canola	cytosol	31.03	30.09
CDY43957	Canola	cytosol	31.44	29.9
CDX87735	Canola	cytosol	31.44	29.74
CDX77644	Canola	cytosol	30.76	29.6
CDY35152	Canola	plastid	31.3	29.39
CDY03235	Canola	plastid	31.44	29.37
CDY22061	Canola	mitochondrion	7.99	23.14
CDY21897	Canola	mitochondrion	7.99	23.14

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	GO:A0A078H6R4	UniProt:A0A078H6R4
EnsemblPlants:CDY32488	ProteinID:CDY32488	ProteinID:CDY32488.1	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625
EnsemblPlantsGene:GSBRNA2T00052464001	InterPro:IPR016158	InterPro:IPR036388	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788
SUPFAM:SSF75632	UniPathway:UPA00143	UniParc:UPI0004EED08D	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg

Description

BnaA09g51080DBnaA09g51080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6R4]

Coordinates

chrLK032295:+:202633..205631

Molecular Weight (calculated)

85767.0 Da

IEP (calculated)

7.741

GRAVY (calculated)

-0.454

Length

738 amino acids

Sequence
(BLAST)

001: MSFSQNREPI TIEDGFKLID AAVTKLTRII EGKPEPPFLP EEYIGNYTIV YNMCIQKPPH DSSGPLYEKY GAILQAYDKL TILPSIMEKH DEYMLRELSR
101: WWEINKIMVR WLSHFFYYLD RYYIARNGIP SLTVVGMTCF RDHVYEKVHF NVKQVVIALI HKEREGQQID RALLKNVLDL FVQNGMGNME RYEKDFEDFF
201: LTETNSYYSR KASRWIQEDS CPEYRIKAEE SLKKEKERVS HYLHSDTEPK LVANVQTNLL VSVAKQLLEK ENSGCSALLR DDKTDDLSRM YRLYHAIPQG
301: LEPVAVAFRL HVTAEGNSLI KQAEDAATSG IVEEQVLVRK IIDLHDKYMA YVTDCFQNHT LFHKSLKEAF EIFCNKKVAG SSSAEMLATF CDNLFKKAAN
401: DKSNDDSTIE STIDNVVKLL DYISDKDLFA EFYRKKLARR LLFGKFSDDH ERSILTKLKG QFGGQFTSKM EGMVTDMQLG KDQQTGFEEY LKNANTGKPK
501: GIDFTVTVLT TGFWPSYKTS DLNLPLEMVN CIESFKAHYE IKTNHRRLMW IYSLGNCNLT ARFDAKPIEL IVSTYQAAVL CAFNHTERLT YQELIDQLNL
601: SHEDLVRVLH SLSCAKYKFL KKEPASKTIS KTDSFEFNSK FTDKMRRIKV PLPPVDDRKK VVEDVDKDRR YAIDASLVRI MKSRKVLPHQ QLVSECVEQL
701: SRMFKPDIKM IKKRIEDLIS RDYLERDTEN PNTFKYVA

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.