CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038140	Potato	cytosol	57.38	30.84
CDY37452	Canola	cytosol	31.15	29.01
Solyc06g008080.1.1	Tomato	cytosol	54.1	21.57
CDY51863	Canola	cytosol	62.3	17.59
CDX90932	Canola	cytosol	79.51	13.14
CDY18013	Canola	cytosol	79.51	13.14
CDY21896	Canola	cytosol	79.51	13.14
CDY22060	Canola	cytosol	79.51	13.14
PGSC0003DMT400061802	Potato	cytosol	73.77	12.24
GSMUA_AchrUn_...	Banana	cytosol	72.95	12.24
Solyc06g084520.2.1	Tomato	cytosol	73.77	12.16
VIT_05s0020g01320.t01	Wine grape	cytosol	73.77	12.1
KRH50876	Soybean	endoplasmic reticulum	73.77	12.1
KRH02236	Soybean	cytosol, nucleus	72.95	11.96
KRH12127	Soybean	cytosol	72.95	11.96
KRH37131	Soybean	cytosol, nucleus	72.95	11.96
EES00748	Sorghum	cytosol	72.95	11.96
GSMUA_Achr7P03700_001	Banana	cytosol	72.13	11.83
KRH15695	Soybean	cytosol	35.25	11.78
TraesCS1B01G118000.1	Wheat	cytosol	71.31	11.69
TraesCS1D01G098500.3	Wheat	cytosol	71.31	11.69
HORVU1Hr1G020400.1	Barley	cytosol	71.31	11.68
TraesCS1A01G090000.1	Wheat	cytosol	70.49	11.56
EES19028	Sorghum	cytosol	70.49	11.56
GSMUA_Achr1P14740_001	Banana	cytosol	70.49	11.56
PGSC0003DMT400029607	Potato	cytosol	69.67	11.5
Zm00001d010858_P007	Maize	cytosol	70.49	11.48
VIT_07s0104g01590.t01	Wine grape	cytosol	69.67	11.47
Solyc09g074680.2.1	Tomato	cytosol	68.85	11.35
TraesCS1A01G089900.1	Wheat	cytosol, golgi	68.85	11.26
TraesCS1B01G117900.1	Wheat	cytosol	68.85	11.26
TraesCS1D01G098400.2	Wheat	cytosol	68.85	11.26
HORVU1Hr1G020390.1	Barley	cytosol	68.85	11.26
Zm00001d024855_P007	Maize	cytosol	70.49	11.1
Solyc09g010050.1.1	Tomato	cytosol	60.66	10.07
CDY51951	Canola	cytosol	60.66	10.04
PGSC0003DMT400023111	Potato	cytosol	59.84	9.89
PGSC0003DMT400022865	Potato	cytosol	59.02	9.8
CDX67439	Canola	cytosol	55.74	9.67
CDY11663	Canola	cytosol	54.92	9.53
CDX93643	Canola	cytosol	38.52	9.31
CDX89925	Canola	cytosol	54.1	9.05
CDY32488	Canola	cytosol	54.1	8.94
CDX89926	Canola	cytosol	51.64	8.76
CDY21897	Canola	mitochondrion	11.48	5.49
CDY22061	Canola	mitochondrion	11.48	5.49
PGSC0003DMT400023105	Potato	cytosol	22.13	4.76
CDY18137	Canola	cytosol	53.28	4.43
CDY45004	Canola	cytosol	22.95	3.83
CDY16196	Canola	cytosol	22.95	3.83
CDY50732	Canola	cytosol	22.95	3.83
CDY46437	Canola	cytosol	22.95	3.83
CDY33461	Canola	cytosol	20.49	3.29
CDY35152	Canola	plastid	20.49	3.18
CDY03235	Canola	plastid	20.49	3.16
CDX77644	Canola	cytosol	19.67	3.13
CDY43957	Canola	cytosol	19.67	3.09
CDX87735	Canola	cytosol	19.67	3.08
PGSC0003DMT400097727	Potato	cytosol	0.82	0.58
CDY51862	Canola	cytosol	0.82	0.35
CDY72590	Canola	cytosol	0.0	0.0
Os03t0786800-01	Rice	cytosol, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1310.10	MapMan:35.1	GO:A0A078DPY1	EnsemblPlants:CDX91291	ProteinID:CDX91291	ProteinID:CDX91291.1
InterPro:Cullin_N	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0031625
EnsemblPlantsGene:GSBRNA2T00152538001	PFAM:PF00888	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SUPFAM:SSF74788	UniParc:UPI0004EE2EC2
SEG:seg	:	:	:	:	:

Description

BnaC02g27020D

Coordinates

chrLK031866:+:1244566..1245356

Molecular Weight (calculated)

14944.7 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.822

Length

122 amino acids

Sequence
(BLAST)

001: MCTQKPLHDH SQQLYEKYHE PFEEYIKSTV MHVLKEKHDE YMMQEPAKRW SNHKVIVRWL SRFCYYLDRF ISQRSLPLLN EVFLTCFRDL VDKEHEDSGS
101: YYSRKSSSWI HEDSCPDYML KA

Best Arabidopsis Sequence Match ( AT4G02570.1 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.