Factsheet for VIT_07s0104g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g01320.t01	Wine grape	cytosol	83.13	82.8
PGSC0003DMT400061802	Potato	cytosol	78.81	79.46
PGSC0003DMT400029607	Potato	cytosol	77.46	77.67
PGSC0003DMT400023105	Potato	cytosol	55.87	73.02
PGSC0003DMT400023111	Potato	cytosol	71.39	71.68
PGSC0003DMT400022865	Potato	cytosol	70.31	70.88
CDX91291	Canola	nucleus	11.47	69.67
PGSC0003DMT400038140	Potato	cytosol	20.38	66.52
PGSC0003DMT400097727	Potato	cytosol	14.17	61.05
PGSC0003DMT400085888	Potato	cytosol	9.85	52.9
VIT_05s0020g01340.t01	Wine grape	mitochondrion	8.91	40.99
VIT_01s0026g02230.t01	Wine grape	cytosol	33.6	33.97
VIT_14s0108g00490.t01	Wine grape	cytosol	34.01	32.14
VIT_10s0003g03710.t01	Wine grape	cytosol	32.52	30.05

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100261361	wikigene:100261361	MapMan:19.2.2.8.1.2
EMBL:AM461784	ProteinID:CAN74678	ProteinID:CAN74678.1	ProteinID:CBI32243	ProteinID:CBI32243.3	InterPro:Cullin_N
InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	UniProt:D7TP20	EMBL:FN596005
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158	InterPro:IPR036388	EntrezGene:LOC100261361	wikigene:LOC100261361
PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182
SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	TIGR:TC59647	UniParc:UPI0001983962
ArrayExpress:VIT_07s0104g01590	EnsemblPlantsGene:VIT_07s0104g01590	EnsemblPlants:VIT_07s0104g01590.t01	unigene:Vvi.1723	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_002266031	RefSeq:XP_002266031.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:2559673..2568927

Molecular Weight (calculated)

86489.0 Da

IEP (calculated)

6.963

GRAVY (calculated)

-0.432

Length

741 amino acids

Sequence
(BLAST)

001: MTINDNKITD LDHGWDYMQK GIIKLKKILE GLPEPQFSSE DYMMLYTTIY NMCTQKPPHD YSQQLYEKYR EAFEEYITVT VLPSLRDKHD EFMLRELVKR
101: WANHKVMVKW LSRFFYYLDR YFIARRSLPA LNEVGLACFR ELVYQEVHGR VKDAVISLID QEREGEQIDR ALLKNVLDIF VEIGMGKMDY YADDFEADML
201: NDTAAYYSRK ASNWVLKDSC PDYMLKAEEC LKRERDRVSH YLHISSEPKL VEKVQTELLV VYANQLLEKE QSGCHALLRD EKVDDLSRIY RLYHKIPRGL
301: EPVSSIFKQR VSDEGLALVN QAIDAANNQA ENVRSVHEQV LVRKIIELHD KYMVYVCNCF MNQSLFHKAL KEAFEIFCNK TVAGCSSAEL LAAFCDNILK
401: KGGSEKLSDE AIEDTLEKVV KLLAYIGDKD LFAEFYRKKL ARRLLFDRSA NDEHERSILT KLKQQCGGQF TSKMEGMVTD LALARENQGH FEEYLSNNPI
501: ANPGIDLTVT VLTTGYWPSY KSSDLNLPAE MVRCVEVFKE YYHSKAQQRK LSWIYSLGNC NISGRFDSKT IELIVSTYQA SVLLLFNNSD RLSFSEIMDQ
601: SNLGHDDLVR VLLSLSCAKY KILNKEPNTK TISPTDYFEF NSKFTDRMRR IKIPLPPVEE RKKIVEDIDK DRRYAIDASI VRIMKSRKIL SHQQLVTECV
701: EQLSRLFKPD FKAIKKRIED LISRDYLERD KENPNLYRYV A

Best Arabidopsis Sequence Match ( AT4G02570.4 )
(BLAST)

001: MERKTIDLEQ GWDYMQTGIT KLKRILEGLN EPAFDSEQYM MLYTTIYNMC TQKPPHDYSQ QLYDKYREAF EEYINSTVLP ALREKHDEFM LRELFKRWSN
101: HKVMVRWLSR FFYYLDRYFI ARRSLPPLNE VGLTCFRDLV YNELHSKVKQ AVIALVDKER EGEQIDRALL KNVLDIYVEI GMGQMERYEE DFESFMLQDT
201: SSYYSRKASS WIQEDSCPDY MLKSEECLKK ERERVAHYLH SSSEPKLVEK VQHELLVVFA SQLLEKEHSG CRALLRDDKV DDLSRMYRLY HKILRGLEPV
301: ANIFKQHVTA EGNALVQQAE DTATNQVANT ASVQEQVLIR KVIELHDKYM VYVTECFQNH TLFHKALKEA FEIFCNKTVA GSSSAELLAT FCDNILKKGG
401: SEKLSDEAIE DTLEKVVKLL AYISDKDLFA EFYRKKLARR LLFDRSANDD HERSILTKLK QQCGGQFTSK MEGMVTDLTL ARENQNSFED YLGSNPAANP
501: GIDLTVTVLT TGFWPSYKSF DINLPSEMIK CVEVFKGFYE TKTKHRKLTW IYSLGTCHIN GKFDQKAIEL IVSTYQAAVL LLFNTTDKLS YTEILAQLNL
601: SHEDLVRLLH SLSCAKYKIL LKEPNTKTVS QNDAFEFNSK FTDRMRRIKI PLPPVDERKK VVEDVDKDRR YAIDAAIVRI MKSRKVLGHQ QLVSECVEQL
701: SRMFKPDIKA IKKRMEDLIT RDYLERDKEN PNMFRYLA

Arabidopsis Description

CUL1AT4G02570 protein [Source:UniProtKB/TrEMBL;Acc:B9DGE3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.