Factsheet for VIT_01s0026g02230.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02520.t01
VIT_05s0094g00950.t01
VIT_06s0009g01030.t01
VIT_07s0104g00020.t01
VIT_07s0129g00210.t01
VIT_08s0040g00430.t01
VIT_11s0016g01990.t01
VIT_11s0016g03010.t01
VIT_13s0019g02260.t01
VIT_17s0000g09790.t01
VIT_18s0001g01590.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	VIT_05s0094g00950.t01	AT1G05690.1	15772280
AT1G26830.1	VIT_11s0016g01990.t01	AT1G64280.1	19490895
AT1G26830.1	VIT_08s0040g00430.t01	AT2G26990.1	12615944
AT1G26830.1	VIT_13s0019g02260.t01	AT2G39760.1	15618422
AT1G26830.1	VIT_13s0019g02260.t01	AT2G39760.1	15659098
AT1G26830.1	VIT_13s0019g02260.t01	AT2G39760.1	15772280
AT1G26830.1	VIT_05s0020g02520.t01	AT3G06190.1	15772280
AT1G26830.1	VIT_06s0009g01030.t01	AT3G43700.1	15772280
AT1G26830.1	VIT_17s0000g09790.t01	AT3G48360.1	15772280
AT1G26830.1	VIT_11s0016g03010.t01	AT4G07670.1	15749712
AT1G26830.1	VIT_18s0001g01590.t01	AT4G08455.1	15749712
AT1G26830.1	VIT_07s0129g00210.t01	AT4G37610.1	15772280
AT1G26830.1	VIT_07s0104g00020.t01	AT5G13060.1	15659098
AT1G26830.1	VIT_17s0000g09790.t01	AT5G63160.1	15772280
AT1G69670.1	VIT_13s0019g02260.t01	AT2G39760.1	15618422
AT1G69670.1	VIT_13s0019g02260.t01	AT2G39760.1	15659098
AT1G69670.1	VIT_11s0016g03010.t01	AT4G07670.1	15749712
AT1G69670.1	VIT_18s0001g01590.t01	AT4G08455.1	15749712
AT1G69670.1	VIT_07s0104g00020.t01	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010820.2.1	Tomato	cytosol	88.13	88.01
PGSC0003DMT400016765	Potato	cytosol	88.13	88.01
KRH45896	Soybean	cytosol	85.54	85.66
KRG99095	Soybean	cytosol	85.54	85.66
AT1G69670.1	Thale cress	cytosol	83.22	83.33
GSMUA_Achr8P16990_001	Banana	cytosol	80.49	83.33
AT1G26830.1	Thale cress	cytosol	83.08	83.2
GSMUA_Achr7P18000_001	Banana	cytosol	80.35	83.19
GSMUA_AchrUn_...	Banana	cytosol	80.22	83.05
EES05529	Sorghum	cytosol	83.08	82.74
Zm00001d018043_P001	Maize	cytosol	82.95	82.61
VIT_14s0108g00490.t01	Wine grape	cytosol	88.27	82.53
TraesCS6D01G285800.1	Wheat	cytosol	82.67	82.34
TraesCS6B01G335200.1	Wheat	cytosol	82.54	82.2
TraesCS6A01G306600.1	Wheat	cytosol	82.54	82.2
CDY50732	Canola	cytosol	81.86	81.97
CDY16196	Canola	cytosol	81.86	81.97
Bra016291.1-P	Field mustard	cytosol	81.72	81.83
CDY45004	Canola	cytosol	81.72	81.83
Bra024680.1-P	Field mustard	cytosol	81.58	81.69
CDY46437	Canola	cytosol	81.58	81.69
Os02t0746000-01	Rice	cytosol	81.99	81.66
HORVU6Hr1G075720.2	Barley	cytosol	81.99	80.56
GSMUA_AchrUn_...	Banana	cytosol	64.94	80.0
KRH70713	Soybean	cytosol	74.49	75.1
VIT_10s0003g03710.t01	Wine grape	cytosol	40.79	37.28
VIT_05s0020g01320.t01	Wine grape	cytosol	35.2	34.68
VIT_07s0104g01590.t01	Wine grape	cytosol	33.97	33.6
VIT_05s0020g01340.t01	Wine grape	mitochondrion	3.68	16.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100265464	wikigene:100265464	MapMan:19.2.2.8.2.1
EMBL:AM484063	ProteinID:CAN81888	ProteinID:CAN81888.1	ProteinID:CCB56557	ProteinID:CCB56557.1	ncoils:Coil
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	UniProt:F6HPC9
EMBL:FN596002	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461
GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158	InterPro:IPR036388	EntrezGene:LOC100265464
wikigene:LOC100265464	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF95
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI00015CBCDE
ArrayExpress:VIT_01s0026g02230	EnsemblPlantsGene:VIT_01s0026g02230	EnsemblPlants:VIT_01s0026g02230.t01	unigene:Vvi.18784	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
RefSeq:XP_002275251	RefSeq:XP_002275251.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:11680976..11686951

Molecular Weight (calculated)

85352.1 Da

IEP (calculated)

8.240

GRAVY (calculated)

-0.503

Length

733 amino acids

Sequence
(BLAST)

001: MGSQKKRNFQ IEAFKHRVVV DPKYADKTWK ILEHAIHEIY NHNASGLSFE ELYRNAYNMV LHKFGEKLYS GLVSTMTSHL KDISKFIEAA QGGLFLEELN
101: RKWADHNKAL QMIRDILMYM DRTFIPSTHK TPVHELGLNL WRDNIIHSSK IQTRLLNTLL ELVLRERNGE VINRGLMRNI IKMLMDLGSS VYQEDFEKPF
201: LEVSADFYRV ESQKFIECCD CADYLKKAER RLNEEMERVS QYLDAKSEVK ITNVVEKEMI ANHMLRLVHM ENSGLVNMLL DDKYDDLGRM YNLFRRVPNG
301: LSTIREVMTS HIRDTGKHLV TDPERLRDPV EFVQRLLDEK DKYDRIIGSS FNNDKTFQNA LTSSFEYFIN LNPRSPEFIS LFVDDKLRKG LKGVSEEDVE
401: IILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTCK LEGMFTDMKT SQDTMQGFNS AHGADLGDGP TLAVTVLTTG
501: SWPTQPSITC NLPTEMLALC EKFRSYYLGT HTGRRLTWQT NMGTADIKAT FAKGQKHELH VSTYQMCVLM LFNNADRLSY KEIEQATEIP ASDLKRCMQS
601: MACVKGKNVL RKEPMSKDIG EDDVFFVNDK FTNKLYKVKI GTVVAQKETE PEKQETRQRV EEDRKPQIEA AIVRIMKSRR VLDHNNLIAE VTKQLQSRFL
701: ANPVEIKKRI ESLIERDFLE RDNVDRKLYR YLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.