CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94272
KRG94968
KRG95533
KRG97837
KRH03892
KRH14738
KRH31032
KRH37416
KRH37914
KRH53314
KRH57174
KRH57710
KRH63672
KRH64603
KRH64921
KRH67208
KRH73429
KRH74227
KRH74232
KRH77116

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26830.1	KRH37416	AT1G64280.1	19490895
AT1G26830.1	KRG94272	AT2G26990.1	12615944
AT1G26830.1	KRG94968	AT2G26990.1	12615944
AT1G26830.1	KRH57710	AT2G26990.1	12615944
AT1G26830.1	KRH64921	AT2G26990.1	12615944
AT1G26830.1	KRG97837	AT2G39760.1	15618422
AT1G26830.1	KRH31032	AT2G39760.1	15618422
AT1G26830.1	KRG97837	AT2G39760.1	15659098
AT1G26830.1	KRH31032	AT2G39760.1	15659098
AT1G26830.1	KRG97837	AT2G39760.1	15772280
AT1G26830.1	KRH31032	AT2G39760.1	15772280
AT1G26830.1	KRH14738	AT3G43700.1	15772280
AT1G26830.1	KRH73429	AT3G43700.1	15772280
AT1G26830.1	KRH03892	AT3G48360.1	15772280
AT1G26830.1	KRH37914	AT3G48360.1	15772280
AT1G26830.1	KRH57174	AT3G48360.1	15772280
AT1G26830.1	KRH63672	AT3G48360.1	15772280
AT1G26830.1	KRH74227	AT4G07670.1	15749712
AT1G26830.1	KRH74232	AT4G07670.1	15749712
AT1G26830.1	KRH53314	AT4G08455.1	15749712
AT1G26830.1	KRH64603	AT4G08455.1	15749712
AT1G26830.1	KRH77116	AT4G37610.1	15772280
AT1G26830.1	KRG95533	AT5G13060.1	15659098
AT1G26830.1	KRH67208	AT5G13060.1	15659098
AT1G26830.1	KRH03892	AT5G63160.1	15772280
AT1G26830.1	KRH37914	AT5G63160.1	15772280
AT1G26830.1	KRH57174	AT5G63160.1	15772280
AT1G26830.1	KRH63672	AT5G63160.1	15772280
AT1G69670.1	KRG97837	AT2G39760.1	15618422
AT1G69670.1	KRH31032	AT2G39760.1	15618422
AT1G69670.1	KRG97837	AT2G39760.1	15659098
AT1G69670.1	KRH31032	AT2G39760.1	15659098
AT1G69670.1	KRH74227	AT4G07670.1	15749712
AT1G69670.1	KRH74232	AT4G07670.1	15749712
AT1G69670.1	KRH53314	AT4G08455.1	15749712
AT1G69670.1	KRH64603	AT4G08455.1	15749712
AT1G69670.1	KRG95533	AT5G13060.1	15659098
AT1G69670.1	KRH67208	AT5G13060.1	15659098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45896	Soybean	cytosol	81.57	81.01
KRG99095	Soybean	cytosol	81.57	81.01
Solyc01g010820.2.1	Tomato	cytosol	75.24	74.52
VIT_01s0026g02230.t01	Wine grape	cytosol	75.1	74.49
PGSC0003DMT400016765	Potato	cytosol	75.1	74.39
CDY16196	Canola	cytosol	73.31	72.81
Bra016291.1-P	Field mustard	cytosol	73.18	72.68
CDY45004	Canola	cytosol	73.18	72.68
AT1G26830.1	Thale cress	cytosol	73.04	72.54
CDY50732	Canola	cytosol	73.04	72.54
CDY46437	Canola	cytosol	73.04	72.54
Bra024680.1-P	Field mustard	cytosol	73.04	72.54
KRH18483	Soybean	cytosol	72.49	71.9
KRG93520	Soybean	cytosol	72.08	71.49
GSMUA_Achr8P16990_001	Banana	cytosol	69.6	71.47
AT1G69670.1	Thale cress	cytosol	71.94	71.45
GSMUA_Achr7P18000_001	Banana	cytosol	69.46	71.33
GSMUA_AchrUn_...	Banana	cytosol	68.78	70.62
EES05529	Sorghum	cytosol	71.25	70.38
TraesCS6D01G285800.1	Wheat	cytosol	70.84	69.97
TraesCS6B01G335200.1	Wheat	cytosol	70.84	69.97
Os02t0746000-01	Rice	cytosol	70.84	69.97
Zm00001d018043_P001	Maize	cytosol	70.7	69.84
TraesCS6A01G306600.1	Wheat	cytosol	70.7	69.84
HORVU6Hr1G075720.2	Barley	cytosol	70.29	68.5
GSMUA_AchrUn_...	Banana	cytosol	55.85	68.24
KRH21073	Soybean	cytosol	17.33	44.06
KRH42547	Soybean	cytosol	38.1	36.02
KRH58640	Soybean	cytosol	38.38	36.0
KRH11182	Soybean	cytosol, plastid	37.96	35.03
KRH68142	Soybean	cytosol	32.74	32.12
KRG96405	Soybean	cytosol	32.46	31.98
KRH37131	Soybean	cytosol, nucleus	32.32	31.59
KRH12127	Soybean	cytosol	32.32	31.59
KRH02236	Soybean	cytosol, nucleus	32.19	31.45
KRH50876	Soybean	endoplasmic reticulum	32.05	31.32
KRH15695	Soybean	cytosol	14.99	29.86
KRH21072	Soybean	plastid	18.84	28.36

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	EntrezGene:100782923	MapMan:19.2.2.8.2.1	EMBL:ACUP02000791
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	EnsemblPlantsGene:GLYMA_02G106500
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
GO:GO:0042787	GO:GO:0061630	UniProt:I1JE36	InterPro:IPR016158	InterPro:IPR036388	EnsemblPlants:KRH70713
ProteinID:KRH70713	ProteinID:KRH70713.1	PFAM:PF00888	PFAM:PF10557	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF95	SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632
UniParc:UPI000233787C	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:10146749..10151360

Molecular Weight (calculated)

84741.8 Da

IEP (calculated)

6.362

GRAVY (calculated)

-0.479

Length

727 amino acids

Sequence
(BLAST)

001: MKTNFHIEAF KNRVSIDPKY FDKTWSVLEH AIHEIYNQND RHLSFEELYR NAYNMVLLNF GERLYSGLVA TMTAHLKEIA RSIEATQEGS FLEEMNRKWN
101: SHNKELQLIG DILMYMDRTY VPKNGKISVH ELGLKLWREN VICSNQIRTR LLNTLLEMVC SERAGEVINR GLFRNITKML MDLGPSVVYG EEFETHFLQV
201: SAEFYQLESQ KFIECCACGD YLKKAESCLK EEMDRVSHYL DPSTEKKITD VVAKEMIENH MLTLIHMENS GLVSMLCEDK YEDLGRMYNL FCRVTDGLAK
301: ILEVMTSHIR ESGKKLVTDP ERLKDPVEFV QRLLDEKHKY DKIINFAFND DKLFQNAFKS SFEYFINLNP RSPEFISLFV DDKLRKGLEG VREDDAEIAL
401: DKAMMLFRYL REKDMFEKYY NLHMAKRLLS GKTVSDDAER SLIVRLKTEC GYQFTSKLEG MLTDMKTSLE TMQGFYASHP ELSDSPTLTV QVLTSGFWPT
501: QSTVICNLPA ELSALCKKFR SYYLDTHTDG RLSWQTHMGT ADIKATFGKV RKHELNVSTY QMCVLMLFNT ADRLGYKEIE QATEIPASDL KRCLQSLALV
601: KGRNVLRKEP MSKDVDEDDA FFVNDKFSSN LYRVKIGTVV AQNESEPEKL ETRRQQVEEE GRRSQIEAVI VRIMKSRKKL DHSNLMAEVT EQFHANPTEV
701: KKRIESLVDR DFMERDDNDR QLYRYLA

Best Arabidopsis Sequence Match ( AT1G26830.1 )
(BLAST)

001: MSNQKKRNFQ IEAFKHRVVV DPKYADKTWQ ILERAIHQIY NQDASGLSFE ELYRNAYNMV LHKFGEKLYT GFIATMTSHL KEKSKLIEAA QGGSFLEELN
101: KKWNEHNKAL EMIRDILMYM DRTYIESTKK THVHPMGLNL WRDNVVHFTK IHTRLLNTLL DLVQKERIGE VIDRGLMRNV IKMFMDLGES VYQEDFEKPF
201: LDASSEFYKV ESQEFIESCD CGDYLKKSEK RLTEEIERVA HYLDAKSEEK ITSVVEKEMI ANHMQRLVHM ENSGLVNMLL NDKYEDLGRM YNLFRRVTNG
301: LVTVRDVMTS HLREMGKQLV TDPEKSKDPV EFVQRLLDER DKYDKIINTA FGNDKTFQNA LNSSFEYFIN LNARSPEFIS LFVDDKLRKG LKGITDVDVE
401: VILDKVMMLF RYLQEKDVFE KYYKQHLAKR LLSGKTVSDD AERSLIVKLK TECGYQFTSK LEGMFTDMKT SEDTMRGFYG SHPELSEGPT LIVQVLTTGS
501: WPTQPAVPCN LPAEVSVLCE KFRSYYLGTH TGRRLSWQTN MGTADIKAIF GKGQKHELNV STFQMCVLML FNNSDRLSYK EIEQATEIPA ADLKRCLQSL
601: ACVKGKNVIK KEPMSKDIGE EDLFVVNDKF TSKFYKVKIG TVVAQKETEP EKQETRQRVE EDRKPQIEAA IVRIMKSRKI LDHNNIIAEV TKQLQPRFLA
701: NPTEIKKRIE SLIERDFLER DSTDRKLYRY LA

Arabidopsis Description

CUL3ACUL3A [Source:UniProtKB/TrEMBL;Acc:A0A178WM88]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.