CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99095
KRH45896
KRH70713

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08455.1	KRG99095	AT1G26830.1	15749712
AT4G08455.1	KRH45896	AT1G26830.1	15749712
AT4G08455.1	KRH70713	AT1G26830.1	15749712
AT4G08455.1	KRG99095	AT1G69670.1	15749712
AT4G08455.1	KRH45896	AT1G69670.1	15749712
AT4G08455.1	KRH70713	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53314	Soybean	cytosol, mitochondrion	85.66	85.0
VIT_18s0001g01590.t01	Wine grape	cytosol	55.81	54.55
CDY34003	Canola	nucleus	36.05	53.76
GSMUA_Achr8P32570_001	Banana	cytosol	49.22	51.42
Os07t0258700-01	Rice	cytosol	48.84	51.22
CDX83137	Canola	cytosol	52.71	50.94
OQU88783	Sorghum	cytosol	49.61	50.0
TraesCS6A01G046100.1	Wheat	cytosol	28.29	49.32
TraesCS6B01G062000.1	Wheat	cytosol	47.67	48.62
Solyc02g032510.2.1	Tomato	cytosol	51.94	48.03
TraesCS6A01G045900.1	Wheat	cytosol	47.29	47.47
TraesCS6D01G053100.1	Wheat	cytosol	47.29	47.47
AT4G08455.1	Thale cress	cytosol	49.61	47.41
Zm00001d019328_P003	Maize	cytosol	48.84	47.01
HORVU6Hr1G009330.1	Barley	cytosol	47.67	46.24
CDY34002	Canola	cytosol	9.69	35.21
KRH31216	Soybean	cytosol, plastid	18.99	18.22
KRG97659	Soybean	cytosol, plastid	18.99	18.22

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100794443	Gene3D:3.30.710.10	MapMan:35.1	EMBL:ACUP02002770	InterPro:BTB/POZ_dom
ncoils:Coil	EnsemblPlantsGene:GLYMA_04G244900	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625
GO:GO:0042787	GO:GO:0043161	UniProt:I1JZ08	InterPro:IPR000210	EnsemblPlants:KRH64603	ProteinID:KRH64603
ProteinID:KRH64603.1	PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF131	InterPro:SKP1/BTB/POZ_sf
SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI00023BF29B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:51244008..51246671

Molecular Weight (calculated)

29101.3 Da

IEP (calculated)

4.409

GRAVY (calculated)

-0.297

Length

258 amino acids

Sequence
(BLAST)

001: MPPRRCTAAY SAVAQMGSNT SESDAEELVM RCLSCEEEYD VDDSGTCREC YQEANEAEEE LRHEIEELKS KVSFLTLPSP NLNASTADVV LVPVDDSDDA
101: PIPAHKHLLV SRSPVFRAML KNDMTERRSG TIKISDVSYD TLHAFVNYLY TAEASLDNEL ACNLLVLGEK YQVKHLKTYC EKYLIAKMNW DKAISNYAFA
201: YQYNCKQLQS VSLAVILDHM DSLTQNECYA ELVDTNPRLV VEIYETYIGR LLNTAGAF

Best Arabidopsis Sequence Match ( AT4G08455.1 )
(BLAST)

001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS

Arabidopsis Description

BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.